Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.43■□□□□ 0.22
VMP1Q96GC9 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.43■□□□□ 0.22
VMP1Q96GC9 AC106795.1-205ENST00000512851 1056 ntBASIC16.43■□□□□ 0.22
VMP1Q96GC9 AF238378.1-201ENST00000526806 358 ntBASIC16.43■□□□□ 0.22
VMP1Q96GC9 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC16.43■□□□□ 0.22
VMP1Q96GC9 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.43■□□□□ 0.22
VMP1Q96GC9 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VMP1Q96GC9 AP001269.4-201ENST00000609611 512 ntBASIC16.43■□□□□ 0.22
VMP1Q96GC9 AL031008.1-201ENST00000619963 541 ntBASIC16.43■□□□□ 0.22
VMP1Q96GC9 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.43■□□□□ 0.22
VMP1Q96GC9 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
VMP1Q96GC9 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VMP1Q96GC9 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.43■□□□□ 0.22
VMP1Q96GC9 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.43■□□□□ 0.22
VMP1Q96GC9 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VMP1Q96GC9 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.43■□□□□ 0.22
VMP1Q96GC9 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
VMP1Q96GC9 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VMP1Q96GC9 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.43■□□□□ 0.22
VMP1Q96GC9 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
VMP1Q96GC9 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VMP1Q96GC9 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.42■□□□□ 0.22
VMP1Q96GC9 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VMP1Q96GC9 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.42■□□□□ 0.22
VMP1Q96GC9 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VMP1Q96GC9 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VMP1Q96GC9 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.42■□□□□ 0.22
VMP1Q96GC9 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VMP1Q96GC9 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VMP1Q96GC9 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VMP1Q96GC9 AC079781.3-201ENST00000449110 356 ntBASIC16.42■□□□□ 0.22
VMP1Q96GC9 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
VMP1Q96GC9 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.42■□□□□ 0.22
VMP1Q96GC9 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.42■□□□□ 0.22
VMP1Q96GC9 AL355877.3-201ENST00000622820 899 ntBASIC16.42■□□□□ 0.22
VMP1Q96GC9 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.42■□□□□ 0.22
VMP1Q96GC9 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
VMP1Q96GC9 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VMP1Q96GC9 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VMP1Q96GC9 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.42■□□□□ 0.22
VMP1Q96GC9 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VMP1Q96GC9 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
VMP1Q96GC9 AP005117.1-201ENST00000584346 1413 ntBASIC16.42■□□□□ 0.22
VMP1Q96GC9 FLJ38576-201ENST00000623820 2459 ntBASIC16.42■□□□□ 0.22
VMP1Q96GC9 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
VMP1Q96GC9 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VMP1Q96GC9 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VMP1Q96GC9 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VMP1Q96GC9 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VMP1Q96GC9 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
VMP1Q96GC9 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
VMP1Q96GC9 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
VMP1Q96GC9 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.41■□□□□ 0.22
VMP1Q96GC9 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
VMP1Q96GC9 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VMP1Q96GC9 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
VMP1Q96GC9 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VMP1Q96GC9 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VMP1Q96GC9 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.41■□□□□ 0.22
VMP1Q96GC9 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VMP1Q96GC9 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC16.41■□□□□ 0.22
VMP1Q96GC9 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
VMP1Q96GC9 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VMP1Q96GC9 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.41■□□□□ 0.22
VMP1Q96GC9 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VMP1Q96GC9 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VMP1Q96GC9 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VMP1Q96GC9 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.41■□□□□ 0.22
VMP1Q96GC9 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
VMP1Q96GC9 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VMP1Q96GC9 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
VMP1Q96GC9 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.41■□□□□ 0.22
VMP1Q96GC9 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VMP1Q96GC9 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.41■□□□□ 0.22
VMP1Q96GC9 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VMP1Q96GC9 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.41■□□□□ 0.22
VMP1Q96GC9 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.41■□□□□ 0.22
VMP1Q96GC9 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.41■□□□□ 0.22
VMP1Q96GC9 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.41■□□□□ 0.22
VMP1Q96GC9 MTDHP3-201ENST00000594186 672 ntBASIC16.41■□□□□ 0.22
VMP1Q96GC9 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VMP1Q96GC9 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VMP1Q96GC9 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VMP1Q96GC9 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
VMP1Q96GC9 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.41■□□□□ 0.22
VMP1Q96GC9 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VMP1Q96GC9 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VMP1Q96GC9 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
VMP1Q96GC9 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VMP1Q96GC9 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
VMP1Q96GC9 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
VMP1Q96GC9 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.4■□□□□ 0.22
VMP1Q96GC9 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
VMP1Q96GC9 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.4■□□□□ 0.22
VMP1Q96GC9 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
VMP1Q96GC9 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VMP1Q96GC9 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VMP1Q96GC9 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
VMP1Q96GC9 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.4■□□□□ 0.22
VMP1Q96GC9 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms