Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
TTC28Q96AY4 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TTC28Q96AY4 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
TTC28Q96AY4 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TTC28Q96AY4 NME4-207ENST00000450036 985 ntTSL 3 BASIC17.05■□□□□ 0.32
TTC28Q96AY4 BX284668.4-201ENST00000453917 508 ntBASIC17.05■□□□□ 0.32
TTC28Q96AY4 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC17.05■□□□□ 0.32
TTC28Q96AY4 INO80C-210ENST00000590757 595 ntTSL 2 BASIC17.05■□□□□ 0.32
TTC28Q96AY4 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TTC28Q96AY4 ME2-218ENST00000640965 2476 ntTSL 5 BASIC17.05■□□□□ 0.32
TTC28Q96AY4 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
TTC28Q96AY4 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TTC28Q96AY4 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TTC28Q96AY4 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TTC28Q96AY4 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TTC28Q96AY4 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.05■□□□□ 0.32
TTC28Q96AY4 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TTC28Q96AY4 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
TTC28Q96AY4 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
TTC28Q96AY4 ADM-202ENST00000524948 584 ntTSL 2 BASIC17.05■□□□□ 0.32
TTC28Q96AY4 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC17.05■□□□□ 0.32
TTC28Q96AY4 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TTC28Q96AY4 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
TTC28Q96AY4 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TTC28Q96AY4 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
TTC28Q96AY4 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TTC28Q96AY4 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TTC28Q96AY4 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TTC28Q96AY4 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TTC28Q96AY4 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.04■□□□□ 0.32
TTC28Q96AY4 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TTC28Q96AY4 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TTC28Q96AY4 DUX4L45-201ENST00000566406 1057 ntBASIC17.04■□□□□ 0.32
TTC28Q96AY4 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TTC28Q96AY4 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TTC28Q96AY4 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TTC28Q96AY4 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TTC28Q96AY4 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.04■□□□□ 0.32
TTC28Q96AY4 AL353732.1-201ENST00000569618 1459 ntBASIC17.04■□□□□ 0.32
TTC28Q96AY4 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TTC28Q96AY4 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TTC28Q96AY4 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TTC28Q96AY4 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC17.04■□□□□ 0.32
TTC28Q96AY4 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TTC28Q96AY4 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC17.04■□□□□ 0.32
TTC28Q96AY4 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC17.04■□□□□ 0.32
TTC28Q96AY4 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC17.04■□□□□ 0.32
TTC28Q96AY4 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC17.04■□□□□ 0.32
TTC28Q96AY4 KC6-205ENST00000599934 556 ntTSL 4 BASIC17.04■□□□□ 0.32
TTC28Q96AY4 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
TTC28Q96AY4 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TTC28Q96AY4 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TTC28Q96AY4 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.04■□□□□ 0.32
TTC28Q96AY4 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TTC28Q96AY4 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TTC28Q96AY4 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TTC28Q96AY4 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
TTC28Q96AY4 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TTC28Q96AY4 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
TTC28Q96AY4 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TTC28Q96AY4 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
TTC28Q96AY4 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TTC28Q96AY4 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
TTC28Q96AY4 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TTC28Q96AY4 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TTC28Q96AY4 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC17.03■□□□□ 0.32
TTC28Q96AY4 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC17.03■□□□□ 0.32
TTC28Q96AY4 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC17.03■□□□□ 0.32
TTC28Q96AY4 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC17.03■□□□□ 0.32
TTC28Q96AY4 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.03■□□□□ 0.32
TTC28Q96AY4 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TTC28Q96AY4 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TTC28Q96AY4 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TTC28Q96AY4 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TTC28Q96AY4 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TTC28Q96AY4 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TTC28Q96AY4 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC17.03■□□□□ 0.32
TTC28Q96AY4 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TTC28Q96AY4 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TTC28Q96AY4 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC17.03■□□□□ 0.32
TTC28Q96AY4 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC17.03■□□□□ 0.32
TTC28Q96AY4 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC17.03■□□□□ 0.32
TTC28Q96AY4 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC17.03■□□□□ 0.32
TTC28Q96AY4 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TTC28Q96AY4 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC17.03■□□□□ 0.32
TTC28Q96AY4 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC17.03■□□□□ 0.32
TTC28Q96AY4 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC17.03■□□□□ 0.32
TTC28Q96AY4 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TTC28Q96AY4 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.02■□□□□ 0.32
TTC28Q96AY4 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.02■□□□□ 0.32
TTC28Q96AY4 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TTC28Q96AY4 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
TTC28Q96AY4 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
TTC28Q96AY4 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.02■□□□□ 0.32
TTC28Q96AY4 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.02■□□□□ 0.32
TTC28Q96AY4 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.02■□□□□ 0.32
TTC28Q96AY4 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TTC28Q96AY4 AC026954.1-201ENST00000429771 1293 ntBASIC17.02■□□□□ 0.32
TTC28Q96AY4 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
TTC28Q96AY4 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms