Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 AL645939.2-201ENST00000427340 991 ntBASIC5.3□□□□□ -1.56
SYNE1Q8NF91 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 DBET-201ENST00000630918 3363 ntBASIC5.3□□□□□ -1.56
SYNE1Q8NF91 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 MYLKP1-201ENST00000509077 1580 ntBASIC5.3□□□□□ -1.56
SYNE1Q8NF91 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 AC096633.1-201ENST00000422446 749 ntBASIC5.3□□□□□ -1.56
SYNE1Q8NF91 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 RPS15-207ENST00000591032 550 ntTSL 3 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 TNN-203ENST00000622870 3719 ntTSL 5 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 AC007967.3-201ENST00000434308 558 ntBASIC5.3□□□□□ -1.56
SYNE1Q8NF91 BCRP1-201ENST00000444246 691 ntBASIC5.3□□□□□ -1.56
SYNE1Q8NF91 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 MSRA-206ENST00000521209 814 ntTSL 3 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 AC093520.2-201ENST00000561830 333 ntBASIC5.3□□□□□ -1.56
SYNE1Q8NF91 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 CCDC74BP1-201ENST00000508880 1123 ntBASIC5.3□□□□□ -1.56
SYNE1Q8NF91 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 HLA-DRB6-201ENST00000411500 1235 ntBASIC5.3□□□□□ -1.56
SYNE1Q8NF91 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 ARTN-206ENST00000472435 402 ntTSL 3 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 RPL28-209ENST00000560055 670 ntTSL 3 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 AC138761.1-201ENST00000584393 385 ntBASIC5.3□□□□□ -1.56
SYNE1Q8NF91 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 ELL2P1-201ENST00000413990 1906 ntBASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms