Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC18.9■□□□□ 0.62
CCDC60Q8IWA6 AC099522.2-201ENST00000607001 744 ntBASIC18.9■□□□□ 0.62
CCDC60Q8IWA6 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC18.9■□□□□ 0.62
CCDC60Q8IWA6 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC18.9■□□□□ 0.62
CCDC60Q8IWA6 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
CCDC60Q8IWA6 HARS-204ENST00000438307 1789 ntTSL 2 BASIC18.9■□□□□ 0.62
CCDC60Q8IWA6 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC60Q8IWA6 AC005332.8-201ENST00000622750 2735 ntBASIC18.9■□□□□ 0.62
CCDC60Q8IWA6 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
CCDC60Q8IWA6 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC60Q8IWA6 PCDHB18P-201ENST00000524813 2368 ntBASIC18.9■□□□□ 0.62
CCDC60Q8IWA6 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC18.9■□□□□ 0.62
CCDC60Q8IWA6 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC60Q8IWA6 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC60Q8IWA6 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
CCDC60Q8IWA6 AC012569.1-201ENST00000591191 1524 ntBASIC18.9■□□□□ 0.62
CCDC60Q8IWA6 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CCDC60Q8IWA6 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CCDC60Q8IWA6 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.62
CCDC60Q8IWA6 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
CCDC60Q8IWA6 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
CCDC60Q8IWA6 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
CCDC60Q8IWA6 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC60Q8IWA6 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.89■□□□□ 0.61
CCDC60Q8IWA6 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC60Q8IWA6 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC60Q8IWA6 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
CCDC60Q8IWA6 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC60Q8IWA6 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC18.89■□□□□ 0.61
CCDC60Q8IWA6 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC60Q8IWA6 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
CCDC60Q8IWA6 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
CCDC60Q8IWA6 AC112191.1-201ENST00000523689 701 ntBASIC18.89■□□□□ 0.61
CCDC60Q8IWA6 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC18.89■□□□□ 0.61
CCDC60Q8IWA6 THTPA-204ENST00000554970 569 ntTSL 4 BASIC18.89■□□□□ 0.61
CCDC60Q8IWA6 THTPA-206ENST00000556015 535 ntTSL 3 BASIC18.89■□□□□ 0.61
CCDC60Q8IWA6 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
CCDC60Q8IWA6 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
CCDC60Q8IWA6 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC18.89■□□□□ 0.61
CCDC60Q8IWA6 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC18.89■□□□□ 0.61
CCDC60Q8IWA6 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC60Q8IWA6 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC60Q8IWA6 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC60Q8IWA6 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC60Q8IWA6 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC60Q8IWA6 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.89■□□□□ 0.61
CCDC60Q8IWA6 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC18.89■□□□□ 0.61
CCDC60Q8IWA6 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC60Q8IWA6 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
CCDC60Q8IWA6 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 SNHG9-202ENST00000564014 471 ntBASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 IGHV3OR16-6-201ENST00000568775 360 ntBASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 AC091167.2-201ENST00000579581 588 ntBASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC60Q8IWA6 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC60Q8IWA6 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
CCDC60Q8IWA6 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.87■□□□□ 0.61
CCDC60Q8IWA6 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
CCDC60Q8IWA6 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC60Q8IWA6 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC60Q8IWA6 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC60Q8IWA6 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC60Q8IWA6 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms