Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 MIR6775-201ENST00000617557 69 ntBASIC17.81■□□□□ 0.44
CHD9Q3L8U1 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 AC073439.1-201ENST00000624121 1774 ntBASIC17.81■□□□□ 0.44
CHD9Q3L8U1 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 HAUS4P1-201ENST00000406739 1145 ntBASIC17.81■□□□□ 0.44
CHD9Q3L8U1 ZNF767P-206ENST00000513792 565 ntBASIC17.81■□□□□ 0.44
CHD9Q3L8U1 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 RPL28-206ENST00000558752 671 ntTSL 3 BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 AP000974.1-201ENST00000623909 2387 ntBASIC17.81■□□□□ 0.44
CHD9Q3L8U1 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 FAM220BP-201ENST00000377689 816 ntBASIC17.81■□□□□ 0.44
CHD9Q3L8U1 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 AL355994.2-201ENST00000447882 704 ntBASIC17.81■□□□□ 0.44
CHD9Q3L8U1 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 AC105021.1-202ENST00000570572 669 ntBASIC17.81■□□□□ 0.44
CHD9Q3L8U1 MIR6869-201ENST00000619434 62 ntBASIC17.81■□□□□ 0.44
CHD9Q3L8U1 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
CHD9Q3L8U1 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CHD9Q3L8U1 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.8■□□□□ 0.44
CHD9Q3L8U1 AL355312.1-201ENST00000407115 2176 ntBASIC17.8■□□□□ 0.44
CHD9Q3L8U1 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.8■□□□□ 0.44
CHD9Q3L8U1 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
CHD9Q3L8U1 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHD9Q3L8U1 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
CHD9Q3L8U1 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
CHD9Q3L8U1 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC17.8■□□□□ 0.44
CHD9Q3L8U1 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC17.8■□□□□ 0.44
CHD9Q3L8U1 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC17.8■□□□□ 0.44
CHD9Q3L8U1 AC023310.3-201ENST00000557027 670 ntBASIC17.8■□□□□ 0.44
CHD9Q3L8U1 AC100756.1-201ENST00000562736 682 ntBASIC17.8■□□□□ 0.44
CHD9Q3L8U1 AC138749.3-201ENST00000567691 622 ntBASIC17.8■□□□□ 0.44
CHD9Q3L8U1 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC17.8■□□□□ 0.44
CHD9Q3L8U1 AC116165.1-201ENST00000611806 668 ntBASIC17.8■□□□□ 0.44
CHD9Q3L8U1 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHD9Q3L8U1 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHD9Q3L8U1 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHD9Q3L8U1 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHD9Q3L8U1 MYCLP2-201ENST00000449268 967 ntBASIC17.8■□□□□ 0.44
CHD9Q3L8U1 AC093004.1-201ENST00000508850 424 ntBASIC17.8■□□□□ 0.44
CHD9Q3L8U1 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHD9Q3L8U1 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CHD9Q3L8U1 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHD9Q3L8U1 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.8■□□□□ 0.44
CHD9Q3L8U1 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CHD9Q3L8U1 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHD9Q3L8U1 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 MFF-223ENST00000524634 647 ntTSL 2 BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 WT1-AS_2.1-201ENST00000613208 137 ntBASIC17.79■□□□□ 0.44
CHD9Q3L8U1 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms