Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 DUTP2-201ENST00000519164 463 ntBASIC16.43■□□□□ 0.22
COL28A1Q2UY09 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 AL139384.1-201ENST00000612143 3047 ntBASIC16.43■□□□□ 0.22
COL28A1Q2UY09 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 AL121761.2-201ENST00000598007 1648 ntBASIC16.42■□□□□ 0.22
COL28A1Q2UY09 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 RHOQP3-201ENST00000437982 621 ntBASIC16.42■□□□□ 0.22
COL28A1Q2UY09 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 CNN2P2-201ENST00000443536 909 ntBASIC16.42■□□□□ 0.22
COL28A1Q2UY09 CNN2P3-201ENST00000450201 906 ntBASIC16.42■□□□□ 0.22
COL28A1Q2UY09 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 AL136317.3-201ENST00000618497 906 ntBASIC16.42■□□□□ 0.22
COL28A1Q2UY09 MIR6799-201ENST00000620297 69 ntBASIC16.42■□□□□ 0.22
COL28A1Q2UY09 AC073592.5-201ENST00000624854 528 ntBASIC16.42■□□□□ 0.22
COL28A1Q2UY09 AC007064.4-201ENST00000637740 555 ntBASIC16.42■□□□□ 0.22
COL28A1Q2UY09 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.42■□□□□ 0.22
COL28A1Q2UY09 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 AC027307.3-201ENST00000594262 1100 ntBASIC16.41■□□□□ 0.22
COL28A1Q2UY09 AC023141.13-201ENST00000604991 943 ntBASIC16.41■□□□□ 0.22
COL28A1Q2UY09 AL353135.1-201ENST00000606729 504 ntBASIC16.41■□□□□ 0.22
COL28A1Q2UY09 AC009093.7-201ENST00000623853 1223 ntBASIC16.41■□□□□ 0.22
COL28A1Q2UY09 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL28A1Q2UY09 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms