Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXA1P49639 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXA1P49639 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXA1P49639 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXA1P49639 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC14.24□□□□□ -0.13
HOXA1P49639 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
HOXA1P49639 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
HOXA1P49639 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC14.24□□□□□ -0.13
HOXA1P49639 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
HOXA1P49639 SNORA78-201ENST00000459373 127 ntBASIC14.24□□□□□ -0.13
HOXA1P49639 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC14.24□□□□□ -0.13
HOXA1P49639 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC14.24□□□□□ -0.13
HOXA1P49639 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXA1P49639 AL355075.4-201ENST00000554988 638 ntBASIC14.24□□□□□ -0.13
HOXA1P49639 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXA1P49639 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXA1P49639 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC14.24□□□□□ -0.13
HOXA1P49639 AL157888.1-201ENST00000631930 593 ntBASIC14.24□□□□□ -0.13
HOXA1P49639 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXA1P49639 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXA1P49639 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXA1P49639 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HOXA1P49639 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXA1P49639 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXA1P49639 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXA1P49639 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXA1P49639 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC14.24□□□□□ -0.13
HOXA1P49639 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC14.24□□□□□ -0.13
HOXA1P49639 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HOXA1P49639 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXA1P49639 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXA1P49639 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXA1P49639 MED29-202ENST00000594368 1471 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXA1P49639 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HOXA1P49639 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
HOXA1P49639 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HOXA1P49639 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC14.24□□□□□ -0.13
HOXA1P49639 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC14.24□□□□□ -0.13
HOXA1P49639 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
HOXA1P49639 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
HOXA1P49639 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
HOXA1P49639 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXA1P49639 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXA1P49639 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC14.23□□□□□ -0.13
HOXA1P49639 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC14.23□□□□□ -0.13
HOXA1P49639 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXA1P49639 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.23□□□□□ -0.13
HOXA1P49639 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXA1P49639 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC14.23□□□□□ -0.13
HOXA1P49639 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
HOXA1P49639 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
HOXA1P49639 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HOXA1P49639 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC14.23□□□□□ -0.13
HOXA1P49639 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HOXA1P49639 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HOXA1P49639 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXA1P49639 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXA1P49639 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXA1P49639 INGX-201ENST00000359239 846 ntBASIC14.23□□□□□ -0.13
HOXA1P49639 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXA1P49639 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC14.23□□□□□ -0.13
HOXA1P49639 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC14.23□□□□□ -0.13
HOXA1P49639 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC14.23□□□□□ -0.13
HOXA1P49639 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
HOXA1P49639 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC14.23□□□□□ -0.13
HOXA1P49639 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC14.23□□□□□ -0.13
HOXA1P49639 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXA1P49639 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC14.23□□□□□ -0.13
HOXA1P49639 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC14.23□□□□□ -0.13
HOXA1P49639 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
HOXA1P49639 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HOXA1P49639 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXA1P49639 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC14.23□□□□□ -0.13
HOXA1P49639 MIR600HG-201ENST00000449175 5984 ntBASIC14.23□□□□□ -0.13
HOXA1P49639 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
HOXA1P49639 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HOXA1P49639 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HOXA1P49639 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXA1P49639 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
HOXA1P49639 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXA1P49639 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
HOXA1P49639 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
HOXA1P49639 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HOXA1P49639 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HOXA1P49639 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA1P49639 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA1P49639 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA1P49639 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA1P49639 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA1P49639 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA1P49639 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA1P49639 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA1P49639 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
HOXA1P49639 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA1P49639 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA1P49639 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC14.22□□□□□ -0.13
HOXA1P49639 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA1P49639 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA1P49639 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
HOXA1P49639 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms