Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC19.17■□□□□ 0.66
CIITAP33076 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
CIITAP33076 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC19.17■□□□□ 0.66
CIITAP33076 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CIITAP33076 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CIITAP33076 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CIITAP33076 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CIITAP33076 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CIITAP33076 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.17■□□□□ 0.66
CIITAP33076 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CIITAP33076 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC19.16■□□□□ 0.66
CIITAP33076 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC19.16■□□□□ 0.66
CIITAP33076 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CIITAP33076 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CIITAP33076 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CIITAP33076 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC19.16■□□□□ 0.66
CIITAP33076 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CIITAP33076 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CIITAP33076 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CIITAP33076 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CIITAP33076 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC19.16■□□□□ 0.66
CIITAP33076 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CIITAP33076 YBX2P1-201ENST00000394192 760 ntBASIC19.16■□□□□ 0.66
CIITAP33076 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CIITAP33076 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
CIITAP33076 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC19.16■□□□□ 0.66
CIITAP33076 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
CIITAP33076 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC19.16■□□□□ 0.66
CIITAP33076 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC19.16■□□□□ 0.66
CIITAP33076 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CIITAP33076 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CIITAP33076 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC19.16■□□□□ 0.66
CIITAP33076 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CIITAP33076 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CIITAP33076 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC19.16■□□□□ 0.66
CIITAP33076 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CIITAP33076 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
CIITAP33076 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CIITAP33076 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC19.16■□□□□ 0.66
CIITAP33076 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CIITAP33076 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CIITAP33076 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC19.15■□□□□ 0.66
CIITAP33076 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CIITAP33076 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
CIITAP33076 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC19.15■□□□□ 0.66
CIITAP33076 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CIITAP33076 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC19.15■□□□□ 0.66
CIITAP33076 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
CIITAP33076 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CIITAP33076 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CIITAP33076 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CIITAP33076 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC19.15■□□□□ 0.66
CIITAP33076 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CIITAP33076 AL121761.2-201ENST00000598007 1648 ntBASIC19.15■□□□□ 0.66
CIITAP33076 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
CIITAP33076 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC19.15■□□□□ 0.66
CIITAP33076 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
CIITAP33076 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CIITAP33076 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CIITAP33076 FALEC-201ENST00000416894 566 ntTSL 3 BASIC19.15■□□□□ 0.66
CIITAP33076 HCG4-201ENST00000418983 998 ntBASIC19.15■□□□□ 0.66
CIITAP33076 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC19.15■□□□□ 0.66
CIITAP33076 SMN2-210ENST00000511812 867 ntTSL 2 BASIC19.15■□□□□ 0.66
CIITAP33076 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC19.15■□□□□ 0.66
CIITAP33076 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC19.15■□□□□ 0.66
CIITAP33076 MED16-214ENST00000617672 554 ntTSL 5 BASIC19.15■□□□□ 0.66
CIITAP33076 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
CIITAP33076 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CIITAP33076 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
CIITAP33076 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CIITAP33076 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CIITAP33076 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC19.15■□□□□ 0.66
CIITAP33076 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CIITAP33076 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CIITAP33076 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC19.14■□□□□ 0.66
CIITAP33076 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
CIITAP33076 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC19.14■□□□□ 0.65
CIITAP33076 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC19.14■□□□□ 0.65
CIITAP33076 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CIITAP33076 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CIITAP33076 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CIITAP33076 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CIITAP33076 BX842568.4-201ENST00000421222 227 ntBASIC19.14■□□□□ 0.65
CIITAP33076 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC19.14■□□□□ 0.65
CIITAP33076 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC19.14■□□□□ 0.65
CIITAP33076 AC074386.1-202ENST00000463561 864 ntBASIC19.14■□□□□ 0.65
CIITAP33076 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CIITAP33076 AL031432.2-201ENST00000566714 459 ntBASIC19.14■□□□□ 0.65
CIITAP33076 AL928711.1-201ENST00000570165 459 ntBASIC19.14■□□□□ 0.65
CIITAP33076 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC19.14■□□□□ 0.65
CIITAP33076 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC19.14■□□□□ 0.65
CIITAP33076 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CIITAP33076 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CIITAP33076 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
CIITAP33076 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CIITAP33076 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
CIITAP33076 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CIITAP33076 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CIITAP33076 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC19.14■□□□□ 0.65
CIITAP33076 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms