Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL8A1P27658 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
COL8A1P27658 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC14.87□□□□□ -0.03
COL8A1P27658 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL8A1P27658 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL8A1P27658 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
COL8A1P27658 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL8A1P27658 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
COL8A1P27658 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL8A1P27658 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
COL8A1P27658 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL8A1P27658 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL8A1P27658 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC14.87□□□□□ -0.03
COL8A1P27658 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL8A1P27658 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
COL8A1P27658 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL8A1P27658 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL8A1P27658 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.87□□□□□ -0.03
COL8A1P27658 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC14.87□□□□□ -0.03
COL8A1P27658 INE1-201ENST00000456273 945 ntBASIC14.87□□□□□ -0.03
COL8A1P27658 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC14.87□□□□□ -0.03
COL8A1P27658 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC14.87□□□□□ -0.03
COL8A1P27658 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC14.87□□□□□ -0.03
COL8A1P27658 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC14.87□□□□□ -0.03
COL8A1P27658 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
COL8A1P27658 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL8A1P27658 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC14.87□□□□□ -0.03
COL8A1P27658 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC14.87□□□□□ -0.03
COL8A1P27658 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC14.87□□□□□ -0.03
COL8A1P27658 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC14.87□□□□□ -0.03
COL8A1P27658 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL8A1P27658 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL8A1P27658 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL8A1P27658 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL8A1P27658 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL8A1P27658 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL8A1P27658 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
COL8A1P27658 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
COL8A1P27658 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC14.86□□□□□ -0.03
COL8A1P27658 AC007613.1-201ENST00000572811 2597 ntBASIC14.86□□□□□ -0.03
COL8A1P27658 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC14.86□□□□□ -0.03
COL8A1P27658 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC14.86□□□□□ -0.03
COL8A1P27658 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
COL8A1P27658 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL8A1P27658 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL8A1P27658 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC14.86□□□□□ -0.03
COL8A1P27658 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL8A1P27658 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL8A1P27658 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL8A1P27658 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
COL8A1P27658 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL8A1P27658 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL8A1P27658 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL8A1P27658 CD81-202ENST00000381036 880 ntTSL 3 BASIC14.86□□□□□ -0.03
COL8A1P27658 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL8A1P27658 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC14.86□□□□□ -0.03
COL8A1P27658 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.86□□□□□ -0.03
COL8A1P27658 AC112492.5-201ENST00000421897 457 ntBASIC14.86□□□□□ -0.03
COL8A1P27658 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC14.86□□□□□ -0.03
COL8A1P27658 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC14.86□□□□□ -0.03
COL8A1P27658 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.86□□□□□ -0.03
COL8A1P27658 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC14.86□□□□□ -0.03
COL8A1P27658 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC14.86□□□□□ -0.03
COL8A1P27658 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC14.86□□□□□ -0.03
COL8A1P27658 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC14.86□□□□□ -0.03
COL8A1P27658 KRT8P23-201ENST00000560090 1207 ntBASIC14.86□□□□□ -0.03
COL8A1P27658 AC132938.2-201ENST00000579188 680 ntBASIC14.86□□□□□ -0.03
COL8A1P27658 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
COL8A1P27658 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC14.86□□□□□ -0.03
COL8A1P27658 AC073592.8-201ENST00000624126 511 ntBASIC14.86□□□□□ -0.03
COL8A1P27658 AC084121.4-201ENST00000641598 221 ntBASIC14.86□□□□□ -0.03
COL8A1P27658 AL591163.1-201ENST00000641757 987 ntBASIC14.86□□□□□ -0.03
COL8A1P27658 AL645728.2-201ENST00000641974 660 ntBASIC14.86□□□□□ -0.03
COL8A1P27658 AF228730.8-201ENST00000642140 221 ntBASIC14.86□□□□□ -0.03
COL8A1P27658 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC14.86□□□□□ -0.03
COL8A1P27658 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL8A1P27658 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL8A1P27658 AC007541.1-201ENST00000570282 1469 ntBASIC14.86□□□□□ -0.03
COL8A1P27658 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC14.86□□□□□ -0.03
COL8A1P27658 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC14.86□□□□□ -0.03
COL8A1P27658 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL8A1P27658 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL8A1P27658 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC14.86□□□□□ -0.03
COL8A1P27658 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL8A1P27658 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL8A1P27658 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL8A1P27658 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL8A1P27658 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC14.85□□□□□ -0.03
COL8A1P27658 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL8A1P27658 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL8A1P27658 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
COL8A1P27658 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
COL8A1P27658 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC14.85□□□□□ -0.03
COL8A1P27658 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL8A1P27658 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL8A1P27658 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL8A1P27658 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL8A1P27658 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC14.85□□□□□ -0.03
COL8A1P27658 AC087163.2-201ENST00000457299 853 ntBASIC14.85□□□□□ -0.03
COL8A1P27658 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms