Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
CDH3P22223 PCDH8P1-201ENST00000428983 2773 ntBASIC16.81■□□□□ 0.28
CDH3P22223 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDH3P22223 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDH3P22223 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CDH3P22223 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDH3P22223 AC005104.2-201ENST00000427818 678 ntBASIC16.81■□□□□ 0.28
CDH3P22223 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
CDH3P22223 AP000347.1-202ENST00000435868 847 ntBASIC16.81■□□□□ 0.28
CDH3P22223 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.81■□□□□ 0.28
CDH3P22223 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.81■□□□□ 0.28
CDH3P22223 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.81■□□□□ 0.28
CDH3P22223 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.81■□□□□ 0.28
CDH3P22223 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.81■□□□□ 0.28
CDH3P22223 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDH3P22223 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDH3P22223 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CDH3P22223 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDH3P22223 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.81■□□□□ 0.28
CDH3P22223 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDH3P22223 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
CDH3P22223 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.81■□□□□ 0.28
CDH3P22223 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDH3P22223 NME9-203ENST00000383180 2133 ntTSL 2 BASIC16.81■□□□□ 0.28
CDH3P22223 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
CDH3P22223 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH3P22223 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
CDH3P22223 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.8■□□□□ 0.28
CDH3P22223 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.8■□□□□ 0.28
CDH3P22223 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CDH3P22223 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDH3P22223 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH3P22223 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDH3P22223 AC103702.1-201ENST00000548801 2630 ntBASIC16.8■□□□□ 0.28
CDH3P22223 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDH3P22223 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.8■□□□□ 0.28
CDH3P22223 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH3P22223 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.8■□□□□ 0.28
CDH3P22223 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH3P22223 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC16.8■□□□□ 0.28
CDH3P22223 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.8■□□□□ 0.28
CDH3P22223 SLC25A6P5-201ENST00000435663 894 ntBASIC16.8■□□□□ 0.28
CDH3P22223 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC16.8■□□□□ 0.28
CDH3P22223 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.8■□□□□ 0.28
CDH3P22223 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.8■□□□□ 0.28
CDH3P22223 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.8■□□□□ 0.28
CDH3P22223 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC16.8■□□□□ 0.28
CDH3P22223 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.8■□□□□ 0.28
CDH3P22223 AC105339.3-201ENST00000560043 636 ntBASIC16.8■□□□□ 0.28
CDH3P22223 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.8■□□□□ 0.28
CDH3P22223 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDH3P22223 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH3P22223 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH3P22223 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH3P22223 AC009336.1-201ENST00000608941 1553 ntBASIC16.8■□□□□ 0.28
CDH3P22223 REXO1L11P-201ENST00000620964 1927 ntBASIC16.8■□□□□ 0.28
CDH3P22223 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH3P22223 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.8■□□□□ 0.28
CDH3P22223 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.8■□□□□ 0.28
CDH3P22223 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH3P22223 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDH3P22223 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
CDH3P22223 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
CDH3P22223 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDH3P22223 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH3P22223 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH3P22223 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDH3P22223 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH3P22223 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
CDH3P22223 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH3P22223 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH3P22223 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH3P22223 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH3P22223 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH3P22223 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CDH3P22223 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.79■□□□□ 0.28
CDH3P22223 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.79■□□□□ 0.28
CDH3P22223 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.79■□□□□ 0.28
CDH3P22223 AC012640.2-201ENST00000561606 901 ntBASIC16.79■□□□□ 0.28
CDH3P22223 AC006557.2-201ENST00000592985 1240 ntBASIC16.79■□□□□ 0.28
CDH3P22223 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.79■□□□□ 0.28
CDH3P22223 MIR1199-201ENST00000621445 119 ntBASIC16.79■□□□□ 0.28
CDH3P22223 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH3P22223 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.79■□□□□ 0.28
CDH3P22223 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH3P22223 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH3P22223 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.79■□□□□ 0.28
CDH3P22223 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDH3P22223 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.79■□□□□ 0.28
CDH3P22223 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.79■□□□□ 0.28
CDH3P22223 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH3P22223 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.78■□□□□ 0.28
CDH3P22223 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
CDH3P22223 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH3P22223 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH3P22223 AC022211.2-201ENST00000585075 2527 ntBASIC16.78■□□□□ 0.28
CDH3P22223 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH3P22223 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH3P22223 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH3P22223 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms