Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A3P12111 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A3P12111 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
COL6A3P12111 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A3P12111 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A3P12111 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A3P12111 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC17.51■□□□□ 0.39
COL6A3P12111 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
COL6A3P12111 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC17.51■□□□□ 0.39
COL6A3P12111 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC17.51■□□□□ 0.39
COL6A3P12111 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.51■□□□□ 0.39
COL6A3P12111 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC17.51■□□□□ 0.39
COL6A3P12111 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
COL6A3P12111 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A3P12111 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.51■□□□□ 0.39
COL6A3P12111 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A3P12111 NOC2LP1-202ENST00000452600 2235 ntBASIC17.51■□□□□ 0.39
COL6A3P12111 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.51■□□□□ 0.39
COL6A3P12111 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.51■□□□□ 0.39
COL6A3P12111 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A3P12111 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A3P12111 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A3P12111 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
COL6A3P12111 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC17.5■□□□□ 0.39
COL6A3P12111 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
COL6A3P12111 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC17.5■□□□□ 0.39
COL6A3P12111 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC17.5■□□□□ 0.39
COL6A3P12111 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
COL6A3P12111 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
COL6A3P12111 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC17.5■□□□□ 0.39
COL6A3P12111 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC17.5■□□□□ 0.39
COL6A3P12111 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC17.5■□□□□ 0.39
COL6A3P12111 MIR5189-201ENST00000577370 114 ntBASIC17.5■□□□□ 0.39
COL6A3P12111 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC17.5■□□□□ 0.39
COL6A3P12111 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
COL6A3P12111 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC17.5■□□□□ 0.39
COL6A3P12111 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC17.5■□□□□ 0.39
COL6A3P12111 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A3P12111 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC17.5■□□□□ 0.39
COL6A3P12111 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
COL6A3P12111 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A3P12111 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A3P12111 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
COL6A3P12111 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A3P12111 MEP1AP4-201ENST00000423244 1087 ntBASIC17.5■□□□□ 0.39
COL6A3P12111 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A3P12111 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
COL6A3P12111 AL022328.1-201ENST00000610050 478 ntBASIC17.5■□□□□ 0.39
COL6A3P12111 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC17.5■□□□□ 0.39
COL6A3P12111 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC17.5■□□□□ 0.39
COL6A3P12111 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC17.5■□□□□ 0.39
COL6A3P12111 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC17.5■□□□□ 0.39
COL6A3P12111 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A3P12111 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
COL6A3P12111 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC17.5■□□□□ 0.39
COL6A3P12111 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A3P12111 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC17.5■□□□□ 0.39
COL6A3P12111 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC17.5■□□□□ 0.39
COL6A3P12111 RPL13AP19-201ENST00000434320 584 ntBASIC17.5■□□□□ 0.39
COL6A3P12111 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC17.5■□□□□ 0.39
COL6A3P12111 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
COL6A3P12111 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A3P12111 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.5■□□□□ 0.39
COL6A3P12111 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A3P12111 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A3P12111 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A3P12111 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.5■□□□□ 0.39
COL6A3P12111 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC17.49■□□□□ 0.39
COL6A3P12111 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A3P12111 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A3P12111 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A3P12111 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A3P12111 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC17.49■□□□□ 0.39
COL6A3P12111 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC17.49■□□□□ 0.39
COL6A3P12111 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC17.49■□□□□ 0.39
COL6A3P12111 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.49■□□□□ 0.39
COL6A3P12111 AL096828.2-201ENST00000567259 1965 ntBASIC17.49■□□□□ 0.39
COL6A3P12111 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.49■□□□□ 0.39
COL6A3P12111 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC17.49■□□□□ 0.39
COL6A3P12111 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A3P12111 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A3P12111 FLJ13224-201ENST00000313737 1514 ntBASIC17.49■□□□□ 0.39
COL6A3P12111 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC17.49■□□□□ 0.39
COL6A3P12111 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC17.49■□□□□ 0.39
COL6A3P12111 AC097724.1-201ENST00000609581 426 ntBASIC17.49■□□□□ 0.39
COL6A3P12111 AP003419.4-201ENST00000616071 517 ntBASIC17.49■□□□□ 0.39
COL6A3P12111 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC17.49■□□□□ 0.39
COL6A3P12111 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A3P12111 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A3P12111 EGFEM1P-202ENST00000431685 1563 ntBASIC17.49■□□□□ 0.39
COL6A3P12111 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A3P12111 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A3P12111 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.49■□□□□ 0.39
COL6A3P12111 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC17.48■□□□□ 0.39
COL6A3P12111 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL6A3P12111 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
COL6A3P12111 AL589987.1-201ENST00000453380 819 ntBASIC17.48■□□□□ 0.39
COL6A3P12111 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC17.48■□□□□ 0.39
COL6A3P12111 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL6A3P12111 AC005695.3-201ENST00000614522 232 ntBASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms