Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC11O43248 SLC22A20-204ENST00000530038 1673 ntBASIC17.31■□□□□ 0.36
HOXC11O43248 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC11O43248 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC11O43248 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC11O43248 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC11O43248 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC11O43248 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC11O43248 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC11O43248 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC11O43248 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC11O43248 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
HOXC11O43248 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC11O43248 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.31■□□□□ 0.36
HOXC11O43248 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HOXC11O43248 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC17.3■□□□□ 0.36
HOXC11O43248 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.3■□□□□ 0.36
HOXC11O43248 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HOXC11O43248 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HOXC11O43248 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.3■□□□□ 0.36
HOXC11O43248 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HOXC11O43248 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.3■□□□□ 0.36
HOXC11O43248 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.3■□□□□ 0.36
HOXC11O43248 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC17.3■□□□□ 0.36
HOXC11O43248 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
HOXC11O43248 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.3■□□□□ 0.36
HOXC11O43248 AC092474.2-201ENST00000424288 719 ntBASIC17.3■□□□□ 0.36
HOXC11O43248 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HOXC11O43248 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.3■□□□□ 0.36
HOXC11O43248 AC109322.1-201ENST00000524499 1264 ntBASIC17.3■□□□□ 0.36
HOXC11O43248 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
HOXC11O43248 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
HOXC11O43248 MIR3909-201ENST00000579518 119 ntBASIC17.3■□□□□ 0.36
HOXC11O43248 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
HOXC11O43248 LINC00628-201ENST00000628516 1289 ntBASIC17.3■□□□□ 0.36
HOXC11O43248 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
HOXC11O43248 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
HOXC11O43248 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
HOXC11O43248 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
HOXC11O43248 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HOXC11O43248 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
HOXC11O43248 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HOXC11O43248 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.3■□□□□ 0.36
HOXC11O43248 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC17.3■□□□□ 0.36
HOXC11O43248 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.3■□□□□ 0.36
HOXC11O43248 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HOXC11O43248 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.29■□□□□ 0.36
HOXC11O43248 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
HOXC11O43248 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC11O43248 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC11O43248 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC11O43248 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.29■□□□□ 0.36
HOXC11O43248 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC11O43248 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC11O43248 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC11O43248 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC11O43248 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC11O43248 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.29■□□□□ 0.36
HOXC11O43248 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC11O43248 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC11O43248 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC17.29■□□□□ 0.36
HOXC11O43248 AC005237.2-201ENST00000434368 219 ntBASIC17.29■□□□□ 0.36
HOXC11O43248 AL592309.1-201ENST00000443127 649 ntBASIC17.29■□□□□ 0.36
HOXC11O43248 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.29■□□□□ 0.36
HOXC11O43248 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC11O43248 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC17.29■□□□□ 0.36
HOXC11O43248 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC11O43248 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC17.29■□□□□ 0.36
HOXC11O43248 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC11O43248 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.29■□□□□ 0.36
HOXC11O43248 AC087641.1-201ENST00000557561 1021 ntBASIC17.29■□□□□ 0.36
HOXC11O43248 FRMD8P1-201ENST00000440433 1524 ntBASIC17.29■□□□□ 0.36
HOXC11O43248 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC11O43248 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC11O43248 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC11O43248 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC11O43248 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC11O43248 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC11O43248 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC11O43248 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.29■□□□□ 0.36
HOXC11O43248 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC11O43248 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.29■□□□□ 0.36
HOXC11O43248 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HOXC11O43248 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.28■□□□□ 0.36
HOXC11O43248 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC17.28■□□□□ 0.36
HOXC11O43248 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXC11O43248 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXC11O43248 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.28■□□□□ 0.36
HOXC11O43248 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
HOXC11O43248 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXC11O43248 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.28■□□□□ 0.36
HOXC11O43248 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXC11O43248 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXC11O43248 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
HOXC11O43248 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXC11O43248 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
HOXC11O43248 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXC11O43248 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXC11O43248 RNU1-129P-201ENST00000384064 167 ntBASIC17.28■□□□□ 0.36
HOXC11O43248 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms