Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.66■□□□□ 0.26
HDAC3O15379 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.66■□□□□ 0.26
HDAC3O15379 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.66■□□□□ 0.26
HDAC3O15379 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.66■□□□□ 0.26
HDAC3O15379 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC16.66■□□□□ 0.26
HDAC3O15379 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.66■□□□□ 0.26
HDAC3O15379 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.66■□□□□ 0.26
HDAC3O15379 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
HDAC3O15379 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
HDAC3O15379 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.66■□□□□ 0.26
HDAC3O15379 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HDAC3O15379 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.66■□□□□ 0.26
HDAC3O15379 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HDAC3O15379 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HDAC3O15379 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
HDAC3O15379 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC3O15379 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC3O15379 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC3O15379 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.65■□□□□ 0.26
HDAC3O15379 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC3O15379 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.65■□□□□ 0.26
HDAC3O15379 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC3O15379 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC3O15379 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.65■□□□□ 0.26
HDAC3O15379 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC3O15379 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
HDAC3O15379 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC3O15379 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC3O15379 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC3O15379 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC3O15379 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
HDAC3O15379 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC3O15379 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
HDAC3O15379 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC3O15379 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC3O15379 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.65■□□□□ 0.26
HDAC3O15379 TSPY5P-201ENST00000426936 936 ntBASIC16.65■□□□□ 0.26
HDAC3O15379 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC3O15379 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
HDAC3O15379 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.65■□□□□ 0.26
HDAC3O15379 AC005336.2-201ENST00000593183 939 ntBASIC16.65■□□□□ 0.26
HDAC3O15379 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.65■□□□□ 0.26
HDAC3O15379 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
HDAC3O15379 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.65■□□□□ 0.26
HDAC3O15379 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC3O15379 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
HDAC3O15379 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC3O15379 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC3O15379 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC3O15379 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC3O15379 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.65■□□□□ 0.26
HDAC3O15379 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC3O15379 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC3O15379 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.26
HDAC3O15379 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
HDAC3O15379 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
HDAC3O15379 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.26
HDAC3O15379 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
HDAC3O15379 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC3O15379 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC3O15379 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC3O15379 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
HDAC3O15379 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.64■□□□□ 0.25
HDAC3O15379 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC3O15379 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.64■□□□□ 0.25
HDAC3O15379 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC3O15379 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC3O15379 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC3O15379 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC3O15379 AC003669.1-201ENST00000334569 611 ntBASIC16.64■□□□□ 0.25
HDAC3O15379 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC3O15379 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC16.64■□□□□ 0.25
HDAC3O15379 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC3O15379 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC3O15379 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC16.64■□□□□ 0.25
HDAC3O15379 CD320-202ENST00000537716 1119 ntTSL 2 BASIC16.64■□□□□ 0.25
HDAC3O15379 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.64■□□□□ 0.25
HDAC3O15379 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC3O15379 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
HDAC3O15379 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
HDAC3O15379 AC073912.3-201ENST00000624414 853 ntBASIC16.64■□□□□ 0.25
HDAC3O15379 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.64■□□□□ 0.25
HDAC3O15379 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.64■□□□□ 0.25
HDAC3O15379 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC3O15379 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.64■□□□□ 0.25
HDAC3O15379 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.64■□□□□ 0.25
HDAC3O15379 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC3O15379 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC3O15379 ALOX12P2-203ENST00000570921 1945 ntBASIC16.64■□□□□ 0.25
HDAC3O15379 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
HDAC3O15379 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC3O15379 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC3O15379 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC3O15379 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC3O15379 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC3O15379 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC3O15379 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC3O15379 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.64■□□□□ 0.25
HDAC3O15379 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.64■□□□□ 0.25
HDAC3O15379 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms