Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC28.79■■■□□ 2.2
CUX2O14529 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC28.79■■■□□ 2.2
CUX2O14529 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC28.78■■■□□ 2.2
CUX2O14529 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC28.78■■■□□ 2.2
CUX2O14529 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC28.78■■■□□ 2.2
CUX2O14529 AL512361.1-201ENST00000554200 418 ntBASIC28.78■■■□□ 2.2
CUX2O14529 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC28.78■■■□□ 2.2
CUX2O14529 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
CUX2O14529 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC28.78■■■□□ 2.2
CUX2O14529 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC28.78■■■□□ 2.2
CUX2O14529 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
CUX2O14529 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC28.78■■■□□ 2.2
CUX2O14529 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC28.78■■■□□ 2.2
CUX2O14529 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC28.78■■■□□ 2.2
CUX2O14529 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
CUX2O14529 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC28.78■■■□□ 2.2
CUX2O14529 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC28.78■■■□□ 2.2
CUX2O14529 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
CUX2O14529 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
CUX2O14529 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
CUX2O14529 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC28.78■■■□□ 2.2
CUX2O14529 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC28.78■■■□□ 2.2
CUX2O14529 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC28.78■■■□□ 2.2
CUX2O14529 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC28.78■■■□□ 2.2
CUX2O14529 AC010319.3-201ENST00000597028 470 ntBASIC28.78■■■□□ 2.2
CUX2O14529 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC28.78■■■□□ 2.2
CUX2O14529 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC28.77■■■□□ 2.2
CUX2O14529 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC28.77■■■□□ 2.2
CUX2O14529 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC28.77■■■□□ 2.2
CUX2O14529 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC28.77■■■□□ 2.2
CUX2O14529 HLA-H-201ENST00000383620 1096 ntBASIC28.77■■■□□ 2.2
CUX2O14529 MEP1AP4-201ENST00000423244 1087 ntBASIC28.77■■■□□ 2.2
CUX2O14529 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC28.77■■■□□ 2.2
CUX2O14529 RN7SL618P-201ENST00000477850 296 ntBASIC28.77■■■□□ 2.2
CUX2O14529 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC28.77■■■□□ 2.2
CUX2O14529 RN7SL828P-201ENST00000607615 303 ntBASIC28.77■■■□□ 2.2
CUX2O14529 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC28.77■■■□□ 2.2
CUX2O14529 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC28.77■■■□□ 2.2
CUX2O14529 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
CUX2O14529 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC28.77■■■□□ 2.2
CUX2O14529 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.2
CUX2O14529 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC28.76■■■□□ 2.2
CUX2O14529 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC28.76■■■□□ 2.2
CUX2O14529 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC28.76■■■□□ 2.19
CUX2O14529 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
CUX2O14529 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC28.76■■■□□ 2.19
CUX2O14529 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC28.76■■■□□ 2.19
CUX2O14529 MTRF1LP2-201ENST00000506027 1122 ntBASIC28.76■■■□□ 2.19
CUX2O14529 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC28.76■■■□□ 2.19
CUX2O14529 AL133215.2-201ENST00000609242 977 ntBASIC28.76■■■□□ 2.19
CUX2O14529 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC28.76■■■□□ 2.19
CUX2O14529 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC28.76■■■□□ 2.19
CUX2O14529 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
CUX2O14529 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
CUX2O14529 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC28.76■■■□□ 2.19
CUX2O14529 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
CUX2O14529 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC28.75■■■□□ 2.19
CUX2O14529 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC28.75■■■□□ 2.19
CUX2O14529 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC28.75■■■□□ 2.19
CUX2O14529 MTND6P24-201ENST00000440466 518 ntBASIC28.75■■■□□ 2.19
CUX2O14529 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC28.75■■■□□ 2.19
CUX2O14529 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
CUX2O14529 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC28.75■■■□□ 2.19
CUX2O14529 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC28.75■■■□□ 2.19
CUX2O14529 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
CUX2O14529 SRD5A3P1-201ENST00000603021 949 ntBASIC28.75■■■□□ 2.19
CUX2O14529 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
CUX2O14529 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
CUX2O14529 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC28.75■■■□□ 2.19
CUX2O14529 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC28.75■■■□□ 2.19
CUX2O14529 FOXO1B-201ENST00000504678 1527 ntBASIC28.75■■■□□ 2.19
CUX2O14529 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
CUX2O14529 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC28.75■■■□□ 2.19
CUX2O14529 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
CUX2O14529 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
CUX2O14529 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC28.74■■■□□ 2.19
CUX2O14529 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
CUX2O14529 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
CUX2O14529 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC28.74■■■□□ 2.19
CUX2O14529 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
CUX2O14529 RPS2P36-201ENST00000456516 831 ntBASIC28.74■■■□□ 2.19
CUX2O14529 AP001889.1-201ENST00000525414 633 ntBASIC28.74■■■□□ 2.19
CUX2O14529 TPRX2P-201ENST00000535362 881 ntBASIC28.74■■■□□ 2.19
CUX2O14529 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC28.74■■■□□ 2.19
CUX2O14529 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
CUX2O14529 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
CUX2O14529 AL020996.1-203ENST00000536896 2307 ntBASIC28.74■■■□□ 2.19
CUX2O14529 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC28.74■■■□□ 2.19
CUX2O14529 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
CUX2O14529 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC28.74■■■□□ 2.19
CUX2O14529 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC28.74■■■□□ 2.19
CUX2O14529 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC28.74■■■□□ 2.19
CUX2O14529 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
CUX2O14529 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC28.73■■■□□ 2.19
CUX2O14529 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
CUX2O14529 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC28.73■■■□□ 2.19
CUX2O14529 AMT-250ENST00000637682 1823 ntTSL 5 BASIC28.73■■■□□ 2.19
CUX2O14529 LBX2-201ENST00000341396 886 ntTSL 3 BASIC28.73■■■□□ 2.19
CUX2O14529 RAB35-202ENST00000534951 939 ntTSL 2 BASIC28.73■■■□□ 2.19
CUX2O14529 HNRNPUP1-201ENST00000554987 333 ntBASIC28.73■■■□□ 2.19
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms