Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 AC004832.2-201ENST00000426397 482 ntBASIC17.23■□□□□ 0.35
TRIM38O00635 DNAJB3-201ENST00000446806 729 ntBASIC17.23■□□□□ 0.35
TRIM38O00635 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.23■□□□□ 0.35
TRIM38O00635 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.23■□□□□ 0.35
TRIM38O00635 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM38O00635 AC006557.2-201ENST00000592985 1240 ntBASIC17.23■□□□□ 0.35
TRIM38O00635 AP001160.2-201ENST00000596071 487 ntBASIC17.23■□□□□ 0.35
TRIM38O00635 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
TRIM38O00635 AC005593.1-201ENST00000624894 515 ntBASIC17.23■□□□□ 0.35
TRIM38O00635 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.23■□□□□ 0.35
TRIM38O00635 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM38O00635 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM38O00635 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
TRIM38O00635 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
TRIM38O00635 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
TRIM38O00635 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM38O00635 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
TRIM38O00635 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM38O00635 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM38O00635 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM38O00635 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM38O00635 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM38O00635 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM38O00635 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.22■□□□□ 0.35
TRIM38O00635 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM38O00635 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.22■□□□□ 0.35
TRIM38O00635 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.22■□□□□ 0.35
TRIM38O00635 SIGLEC16-201ENST00000599858 1437 ntBASIC17.22■□□□□ 0.35
TRIM38O00635 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM38O00635 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
TRIM38O00635 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM38O00635 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM38O00635 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.22■□□□□ 0.35
TRIM38O00635 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM38O00635 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.22■□□□□ 0.35
TRIM38O00635 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.22■□□□□ 0.35
TRIM38O00635 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM38O00635 GGCT-205ENST00000409436 954 ntTSL 3 BASIC17.22■□□□□ 0.35
TRIM38O00635 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC17.22■□□□□ 0.35
TRIM38O00635 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM38O00635 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC17.22■□□□□ 0.35
TRIM38O00635 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.22■□□□□ 0.35
TRIM38O00635 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.22■□□□□ 0.35
TRIM38O00635 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.22■□□□□ 0.35
TRIM38O00635 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.22■□□□□ 0.35
TRIM38O00635 AC073592.5-201ENST00000624854 528 ntBASIC17.22■□□□□ 0.35
TRIM38O00635 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM38O00635 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
TRIM38O00635 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
TRIM38O00635 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
TRIM38O00635 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.22■□□□□ 0.35
TRIM38O00635 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.22■□□□□ 0.35
TRIM38O00635 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM38O00635 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM38O00635 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM38O00635 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM38O00635 AC018695.7-201ENST00000624587 2492 ntBASIC17.22■□□□□ 0.35
TRIM38O00635 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM38O00635 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM38O00635 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM38O00635 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM38O00635 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM38O00635 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
TRIM38O00635 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM38O00635 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM38O00635 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.21■□□□□ 0.35
TRIM38O00635 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM38O00635 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM38O00635 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM38O00635 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.21■□□□□ 0.35
TRIM38O00635 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM38O00635 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
TRIM38O00635 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM38O00635 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM38O00635 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM38O00635 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM38O00635 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM38O00635 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM38O00635 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
TRIM38O00635 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM38O00635 COX5BP2-201ENST00000392354 334 ntBASIC17.21■□□□□ 0.35
TRIM38O00635 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM38O00635 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM38O00635 AC108751.1-201ENST00000490852 363 ntBASIC17.21■□□□□ 0.35
TRIM38O00635 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM38O00635 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.21■□□□□ 0.35
TRIM38O00635 AC002347.1-201ENST00000569543 541 ntBASIC17.21■□□□□ 0.35
TRIM38O00635 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM38O00635 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM38O00635 AC064836.3-201ENST00000607928 673 ntBASIC17.21■□□□□ 0.35
TRIM38O00635 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
TRIM38O00635 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM38O00635 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM38O00635 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
TRIM38O00635 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM38O00635 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
TRIM38O00635 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.34
TRIM38O00635 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM38O00635 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
TRIM38O00635 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms