Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 PCDHB19P-201ENST00000570871 2371 ntBASIC13.86□□□□□ -0.19
FOXA2Q9Y261 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 AC078925.2-201ENST00000624013 1973 ntBASIC13.86□□□□□ -0.19
FOXA2Q9Y261 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 CTNS-203ENST00000399306 803 ntTSL 3 BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 STX3-203ENST00000529177 1571 ntTSL 2 BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 AC009336.1-201ENST00000608941 1553 ntBASIC13.86□□□□□ -0.19
FOXA2Q9Y261 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 AC092068.3-201ENST00000587894 2016 ntBASIC13.86□□□□□ -0.19
FOXA2Q9Y261 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 AL603756.1-201ENST00000606511 2163 ntBASIC13.86□□□□□ -0.19
FOXA2Q9Y261 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 RCN1P2-201ENST00000398357 915 ntBASIC13.85□□□□□ -0.19
FOXA2Q9Y261 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 STK19B-204ENST00000512515 211 ntBASIC13.85□□□□□ -0.19
FOXA2Q9Y261 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 COX5A-202ENST00000562233 441 ntTSL 3 BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 AL591684.3-201ENST00000605187 298 ntBASIC13.85□□□□□ -0.19
FOXA2Q9Y261 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 CA12-203ENST00000422263 2556 ntTSL 2 BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 AL135999.2-201ENST00000622438 1686 ntBASIC13.85□□□□□ -0.19
FOXA2Q9Y261 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC13.85□□□□□ -0.19
FOXA2Q9Y261 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms