Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 ALOX12P2-203ENST00000570921 1945 ntBASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 AC097637.2-201ENST00000624096 1997 ntBASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 AC046158.3-201ENST00000624947 2558 ntBASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 AP002414.4-201ENST00000589764 1148 ntBASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
LIMA1Q9UHB6 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 PC-204ENST00000524491 1714 ntTSL 2 BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 POM121L3P-201ENST00000419331 1163 ntBASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 LINC00982-205ENST00000420957 435 ntBASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 HLA-J-202ENST00000469281 1241 ntBASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 AL021920.2-201ENST00000624828 1351 ntBASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 AC092364.2-201ENST00000596710 2692 ntBASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMA1Q9UHB6 LINC02199-201ENST00000506655 2702 ntBASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 FOS-208ENST00000555686 1496 ntTSL 2 BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 FRMD6-AS1-201ENST00000617151 2229 ntBASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms