Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 AC079328.2-201ENST00000561241 3354 ntBASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 AL441883.1-201ENST00000566170 1045 ntBASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 LITAF-220ENST00000620789 692 ntTSL 5 BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CHMP1AQ9HD42 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 AL136379.1-201ENST00000623471 2642 ntBASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 AC087499.1-201ENST00000418141 1075 ntBASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 SPDYE15P-201ENST00000424157 909 ntBASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 AL359075.1-203ENST00000462729 1002 ntBASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 GXYLT1P4-201ENST00000613576 1192 ntBASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHMP1AQ9HD42 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CHMP1AQ9HD42 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CHMP1AQ9HD42 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
CHMP1AQ9HD42 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CHMP1AQ9HD42 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CHMP1AQ9HD42 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC14.77□□□□□ -0.04
CHMP1AQ9HD42 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC14.77□□□□□ -0.04
CHMP1AQ9HD42 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CHMP1AQ9HD42 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms