Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF541Q9H0D2 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF541Q9H0D2 PP14571-201ENST00000404327 934 ntTSL 2 BASIC20.25■□□□□ 0.83
ZNF541Q9H0D2 NOP2-211ENST00000540228 668 ntTSL 2 BASIC20.25■□□□□ 0.83
ZNF541Q9H0D2 BANF1P1-201ENST00000553684 263 ntBASIC20.25■□□□□ 0.83
ZNF541Q9H0D2 RAB43P1-201ENST00000561790 589 ntBASIC20.25■□□□□ 0.83
ZNF541Q9H0D2 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC20.25■□□□□ 0.83
ZNF541Q9H0D2 AL035456.1-201ENST00000456064 1369 ntBASIC20.25■□□□□ 0.83
ZNF541Q9H0D2 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF541Q9H0D2 AC093503.3-201ENST00000624917 2352 ntBASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 CENPM-206ENST00000407253 818 ntTSL 2 BASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 MIR4259-201ENST00000584466 101 ntBASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 AC084346.2-201ENST00000607097 949 ntBASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 SNX12-206ENST00000622259 661 ntTSL 5 BASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 AL033527.4-201ENST00000641026 673 ntBASIC20.24■□□□□ 0.83
ZNF541Q9H0D2 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF541Q9H0D2 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC20.23■□□□□ 0.83
ZNF541Q9H0D2 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.23■□□□□ 0.83
ZNF541Q9H0D2 LINC00895-201ENST00000629028 1637 ntBASIC20.23■□□□□ 0.83
ZNF541Q9H0D2 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF541Q9H0D2 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
ZNF541Q9H0D2 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF541Q9H0D2 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF541Q9H0D2 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF541Q9H0D2 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
ZNF541Q9H0D2 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF541Q9H0D2 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF541Q9H0D2 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF541Q9H0D2 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF541Q9H0D2 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF541Q9H0D2 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF541Q9H0D2 HLA-H-201ENST00000383620 1096 ntBASIC20.23■□□□□ 0.83
ZNF541Q9H0D2 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC20.23■□□□□ 0.83
ZNF541Q9H0D2 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF541Q9H0D2 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF541Q9H0D2 AC106886.1-201ENST00000568660 600 ntBASIC20.23■□□□□ 0.83
ZNF541Q9H0D2 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC20.23■□□□□ 0.83
ZNF541Q9H0D2 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF541Q9H0D2 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF541Q9H0D2 LINC00304-203ENST00000565008 1864 ntBASIC20.23■□□□□ 0.83
ZNF541Q9H0D2 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF541Q9H0D2 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF541Q9H0D2 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 AL080243.2-201ENST00000418783 582 ntBASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 AL353705.2-201ENST00000428243 662 ntBASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 SPDYE18-201ENST00000510091 1050 ntBASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 LITAF-210ENST00000571976 548 ntTSL 2 BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 LITAF-214ENST00000574703 486 ntTSL 2 BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 HLA-DQB1-201ENST00000374943 1656 ntBASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC20.22■□□□□ 0.83
ZNF541Q9H0D2 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF541Q9H0D2 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF541Q9H0D2 LINC00896-202ENST00000609602 2128 ntBASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms