Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ARSEP1-201ENST00000420443 635 ntBASIC21.81■■□□□ 1.08
SHANK3Q9BYB0 NME2P1-201ENST00000426182 414 ntBASIC21.81■■□□□ 1.08
SHANK3Q9BYB0 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SHANK3Q9BYB0 AC009407.1-201ENST00000568958 598 ntBASIC21.81■■□□□ 1.08
SHANK3Q9BYB0 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC21.81■■□□□ 1.08
SHANK3Q9BYB0 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SHANK3Q9BYB0 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC21.81■■□□□ 1.08
SHANK3Q9BYB0 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SHANK3Q9BYB0 AC108860.2-201ENST00000562760 2183 ntBASIC21.81■■□□□ 1.08
SHANK3Q9BYB0 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC21.81■■□□□ 1.08
SHANK3Q9BYB0 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
SHANK3Q9BYB0 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 AL512638.1-201ENST00000457493 794 ntBASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 HILS1-202ENST00000545329 423 ntBASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 AC004233.3-201ENST00000607794 1269 ntBASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 AC004408.2-201ENST00000623613 2777 ntBASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 IGHV3-71-201ENST00000523324 359 ntBASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 SNX12-206ENST00000622259 661 ntTSL 5 BASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 RAB34-223ENST00000636154 730 ntTSL 2 BASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC21.8■■□□□ 1.08
SHANK3Q9BYB0 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
SHANK3Q9BYB0 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SHANK3Q9BYB0 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SHANK3Q9BYB0 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC21.79■■□□□ 1.08
SHANK3Q9BYB0 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
SHANK3Q9BYB0 CENPM-206ENST00000407253 818 ntTSL 2 BASIC21.79■■□□□ 1.08
SHANK3Q9BYB0 RPL37AP1-201ENST00000412502 279 ntBASIC21.79■■□□□ 1.08
SHANK3Q9BYB0 KRT18P34-201ENST00000488218 1270 ntBASIC21.79■■□□□ 1.08
SHANK3Q9BYB0 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC21.79■■□□□ 1.08
SHANK3Q9BYB0 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SHANK3Q9BYB0 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SHANK3Q9BYB0 CETN4P-206ENST00000642099 2168 ntBASIC21.79■■□□□ 1.08
SHANK3Q9BYB0 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
SHANK3Q9BYB0 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SHANK3Q9BYB0 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC21.78■■□□□ 1.08
SHANK3Q9BYB0 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
SHANK3Q9BYB0 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC21.78■■□□□ 1.08
SHANK3Q9BYB0 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC21.78■■□□□ 1.08
SHANK3Q9BYB0 MPDU1-223ENST00000582151 728 ntBASIC21.78■■□□□ 1.08
SHANK3Q9BYB0 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SHANK3Q9BYB0 AC027307.3-201ENST00000594262 1100 ntBASIC21.78■■□□□ 1.08
SHANK3Q9BYB0 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SHANK3Q9BYB0 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SHANK3Q9BYB0 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC21.78■■□□□ 1.08
SHANK3Q9BYB0 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC21.78■■□□□ 1.08
SHANK3Q9BYB0 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SHANK3Q9BYB0 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC21.78■■□□□ 1.08
SHANK3Q9BYB0 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC21.78■■□□□ 1.08
SHANK3Q9BYB0 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
SHANK3Q9BYB0 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
SHANK3Q9BYB0 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SHANK3Q9BYB0 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
SHANK3Q9BYB0 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC21.77■■□□□ 1.08
SHANK3Q9BYB0 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
SHANK3Q9BYB0 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SHANK3Q9BYB0 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
SHANK3Q9BYB0 AC008764.6-201ENST00000595909 2069 ntBASIC21.77■■□□□ 1.08
SHANK3Q9BYB0 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC21.77■■□□□ 1.08
SHANK3Q9BYB0 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC21.77■■□□□ 1.08
SHANK3Q9BYB0 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
SHANK3Q9BYB0 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC21.77■■□□□ 1.08
SHANK3Q9BYB0 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
SHANK3Q9BYB0 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SHANK3Q9BYB0 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SHANK3Q9BYB0 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SHANK3Q9BYB0 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.08
SHANK3Q9BYB0 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
SHANK3Q9BYB0 IFT20-216ENST00000588477 774 ntTSL 5 BASIC21.77■■□□□ 1.08
SHANK3Q9BYB0 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SHANK3Q9BYB0 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
SHANK3Q9BYB0 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SHANK3Q9BYB0 AL021920.2-201ENST00000624828 1351 ntBASIC21.76■■□□□ 1.07
SHANK3Q9BYB0 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
SHANK3Q9BYB0 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SHANK3Q9BYB0 AL353705.2-201ENST00000428243 662 ntBASIC21.76■■□□□ 1.07
SHANK3Q9BYB0 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC21.76■■□□□ 1.07
SHANK3Q9BYB0 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC21.76■■□□□ 1.07
SHANK3Q9BYB0 MIR6799-201ENST00000620297 69 ntBASIC21.76■■□□□ 1.07
SHANK3Q9BYB0 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SHANK3Q9BYB0 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC21.76■■□□□ 1.07
SHANK3Q9BYB0 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms