Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC15.23■□□□□ 0.03
SPENQ96T58 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SPENQ96T58 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SPENQ96T58 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SPENQ96T58 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
SPENQ96T58 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SPENQ96T58 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC15.23■□□□□ 0.03
SPENQ96T58 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC15.23■□□□□ 0.03
SPENQ96T58 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SPENQ96T58 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SPENQ96T58 MIR6805-201ENST00000615055 62 ntBASIC15.23■□□□□ 0.03
SPENQ96T58 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC15.23■□□□□ 0.03
SPENQ96T58 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC15.23■□□□□ 0.03
SPENQ96T58 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SPENQ96T58 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SPENQ96T58 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
SPENQ96T58 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SPENQ96T58 AL512384.1-201ENST00000406683 331 ntBASIC15.23■□□□□ 0.03
SPENQ96T58 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SPENQ96T58 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC15.23■□□□□ 0.03
SPENQ96T58 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC15.23■□□□□ 0.03
SPENQ96T58 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC15.23■□□□□ 0.03
SPENQ96T58 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SPENQ96T58 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SPENQ96T58 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
SPENQ96T58 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SPENQ96T58 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC15.23■□□□□ 0.03
SPENQ96T58 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SPENQ96T58 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SPENQ96T58 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
SPENQ96T58 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SPENQ96T58 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SPENQ96T58 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SPENQ96T58 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
SPENQ96T58 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SPENQ96T58 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC15.22■□□□□ 0.03
SPENQ96T58 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC15.22■□□□□ 0.03
SPENQ96T58 MIR4525-201ENST00000580000 75 ntBASIC15.22■□□□□ 0.03
SPENQ96T58 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SPENQ96T58 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC15.22■□□□□ 0.03
SPENQ96T58 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SPENQ96T58 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SPENQ96T58 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC15.22■□□□□ 0.03
SPENQ96T58 AC007541.1-201ENST00000570282 1469 ntBASIC15.22■□□□□ 0.03
SPENQ96T58 AP3S2-216ENST00000617003 1561 ntBASIC15.22■□□□□ 0.03
SPENQ96T58 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SPENQ96T58 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC15.22■□□□□ 0.03
SPENQ96T58 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SPENQ96T58 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
SPENQ96T58 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC15.22■□□□□ 0.03
SPENQ96T58 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC15.22■□□□□ 0.03
SPENQ96T58 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC15.22■□□□□ 0.03
SPENQ96T58 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC15.22■□□□□ 0.03
SPENQ96T58 AL138918.1-201ENST00000568306 659 ntBASIC15.22■□□□□ 0.03
SPENQ96T58 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
SPENQ96T58 FZD10-202ENST00000539839 3282 ntBASIC15.22■□□□□ 0.03
SPENQ96T58 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SPENQ96T58 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC15.22■□□□□ 0.03
SPENQ96T58 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
SPENQ96T58 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SPENQ96T58 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SPENQ96T58 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SPENQ96T58 DGCR5-201ENST00000399539 862 ntBASIC15.22■□□□□ 0.03
SPENQ96T58 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SPENQ96T58 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
SPENQ96T58 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.22■□□□□ 0.03
SPENQ96T58 GIMAP3P-201ENST00000495150 836 ntBASIC15.22■□□□□ 0.03
SPENQ96T58 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.22■□□□□ 0.03
SPENQ96T58 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.22■□□□□ 0.03
SPENQ96T58 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC15.22■□□□□ 0.03
SPENQ96T58 NKG7-205ENST00000600427 520 ntTSL 3 BASIC15.22■□□□□ 0.03
SPENQ96T58 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC15.22■□□□□ 0.03
SPENQ96T58 AL645728.2-201ENST00000641974 660 ntBASIC15.22■□□□□ 0.03
SPENQ96T58 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SPENQ96T58 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SPENQ96T58 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC15.22■□□□□ 0.03
SPENQ96T58 AL671710.1-201ENST00000610245 2349 ntBASIC15.21■□□□□ 0.03
SPENQ96T58 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SPENQ96T58 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
SPENQ96T58 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SPENQ96T58 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
SPENQ96T58 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SPENQ96T58 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SPENQ96T58 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC15.21■□□□□ 0.03
SPENQ96T58 AL161645.1-201ENST00000622716 1255 ntBASIC15.21■□□□□ 0.03
SPENQ96T58 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SPENQ96T58 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC15.21■□□□□ 0.03
SPENQ96T58 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SPENQ96T58 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SPENQ96T58 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SPENQ96T58 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SPENQ96T58 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SPENQ96T58 GPR53P-205ENST00000457298 1084 ntBASIC15.21■□□□□ 0.03
SPENQ96T58 IGHV3-42-201ENST00000520410 361 ntBASIC15.21■□□□□ 0.03
SPENQ96T58 ALG1L8P-201ENST00000533887 760 ntBASIC15.21■□□□□ 0.03
SPENQ96T58 BANF1P1-201ENST00000553684 263 ntBASIC15.21■□□□□ 0.03
SPENQ96T58 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC15.21■□□□□ 0.03
SPENQ96T58 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
SPENQ96T58 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
SPENQ96T58 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms