Protein–RNA interactions for Protein: Q96PY6

NEK1, Serine/threonine-protein kinase Nek1, humanhuman

Predictions only

Length 1,258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1Q96PY6 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC20.23■□□□□ 0.83
NEK1Q96PY6 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NEK1Q96PY6 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC20.23■□□□□ 0.83
NEK1Q96PY6 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NEK1Q96PY6 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
NEK1Q96PY6 RNPS1P1-201ENST00000507437 918 ntBASIC20.23■□□□□ 0.83
NEK1Q96PY6 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
NEK1Q96PY6 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC20.23■□□□□ 0.83
NEK1Q96PY6 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC20.23■□□□□ 0.83
NEK1Q96PY6 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC20.23■□□□□ 0.83
NEK1Q96PY6 AL121912.1-201ENST00000603683 238 ntBASIC20.23■□□□□ 0.83
NEK1Q96PY6 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NEK1Q96PY6 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC20.23■□□□□ 0.83
NEK1Q96PY6 PKD1P1-201ENST00000458669 6805 ntBASIC20.23■□□□□ 0.83
NEK1Q96PY6 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NEK1Q96PY6 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NEK1Q96PY6 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NEK1Q96PY6 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
NEK1Q96PY6 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
NEK1Q96PY6 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NEK1Q96PY6 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NEK1Q96PY6 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NEK1Q96PY6 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC20.23■□□□□ 0.83
NEK1Q96PY6 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC20.23■□□□□ 0.83
NEK1Q96PY6 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC20.23■□□□□ 0.83
NEK1Q96PY6 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC20.22■□□□□ 0.83
NEK1Q96PY6 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC20.22■□□□□ 0.83
NEK1Q96PY6 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
NEK1Q96PY6 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
NEK1Q96PY6 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
NEK1Q96PY6 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC20.22■□□□□ 0.83
NEK1Q96PY6 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NEK1Q96PY6 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NEK1Q96PY6 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
NEK1Q96PY6 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
NEK1Q96PY6 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC20.22■□□□□ 0.83
NEK1Q96PY6 AC084018.2-201ENST00000613093 2607 ntBASIC20.22■□□□□ 0.83
NEK1Q96PY6 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC20.22■□□□□ 0.83
NEK1Q96PY6 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NEK1Q96PY6 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
NEK1Q96PY6 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NEK1Q96PY6 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NEK1Q96PY6 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC20.22■□□□□ 0.83
NEK1Q96PY6 LAGE3P1-201ENST00000425356 484 ntBASIC20.22■□□□□ 0.83
NEK1Q96PY6 RPS2P1-201ENST00000434010 821 ntBASIC20.22■□□□□ 0.83
NEK1Q96PY6 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC20.22■□□□□ 0.83
NEK1Q96PY6 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC20.22■□□□□ 0.83
NEK1Q96PY6 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC20.22■□□□□ 0.83
NEK1Q96PY6 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NEK1Q96PY6 RN7SL510P-201ENST00000581311 263 ntBASIC20.22■□□□□ 0.83
NEK1Q96PY6 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC20.22■□□□□ 0.83
NEK1Q96PY6 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NEK1Q96PY6 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NEK1Q96PY6 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NEK1Q96PY6 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
NEK1Q96PY6 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NEK1Q96PY6 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NEK1Q96PY6 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NEK1Q96PY6 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NEK1Q96PY6 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
NEK1Q96PY6 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
NEK1Q96PY6 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC20.22■□□□□ 0.83
NEK1Q96PY6 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NEK1Q96PY6 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
NEK1Q96PY6 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC20.21■□□□□ 0.83
NEK1Q96PY6 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC20.21■□□□□ 0.83
NEK1Q96PY6 AC006504.4-201ENST00000592118 1568 ntBASIC20.21■□□□□ 0.83
NEK1Q96PY6 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
NEK1Q96PY6 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
NEK1Q96PY6 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NEK1Q96PY6 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NEK1Q96PY6 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NEK1Q96PY6 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC20.21■□□□□ 0.83
NEK1Q96PY6 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
NEK1Q96PY6 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC20.21■□□□□ 0.83
NEK1Q96PY6 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC20.21■□□□□ 0.83
NEK1Q96PY6 PTCHD3P3-201ENST00000403073 906 ntBASIC20.21■□□□□ 0.83
NEK1Q96PY6 FAM197Y8-203ENST00000450145 560 ntBASIC20.21■□□□□ 0.83
NEK1Q96PY6 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC20.21■□□□□ 0.83
NEK1Q96PY6 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC20.21■□□□□ 0.83
NEK1Q96PY6 AC073648.2-201ENST00000510116 352 ntBASIC20.21■□□□□ 0.83
NEK1Q96PY6 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NEK1Q96PY6 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
NEK1Q96PY6 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC20.21■□□□□ 0.83
NEK1Q96PY6 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC20.21■□□□□ 0.83
NEK1Q96PY6 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NEK1Q96PY6 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
NEK1Q96PY6 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
NEK1Q96PY6 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NEK1Q96PY6 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC20.21■□□□□ 0.83
NEK1Q96PY6 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NEK1Q96PY6 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NEK1Q96PY6 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC20.21■□□□□ 0.83
NEK1Q96PY6 TUBB8P12-201ENST00000308911 1335 ntBASIC20.21■□□□□ 0.83
NEK1Q96PY6 TUBB7P-202ENST00000428444 1305 ntBASIC20.21■□□□□ 0.83
NEK1Q96PY6 TUBB8P7-204ENST00000567960 1332 ntBASIC20.21■□□□□ 0.83
NEK1Q96PY6 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
NEK1Q96PY6 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NEK1Q96PY6 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC20.2■□□□□ 0.82
NEK1Q96PY6 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms