Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00477Q96M19 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC12.85□□□□□ -0.35
LINC00477Q96M19 AC092068.3-201ENST00000587894 2016 ntBASIC12.85□□□□□ -0.35
LINC00477Q96M19 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00477Q96M19 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00477Q96M19 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00477Q96M19 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00477Q96M19 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00477Q96M19 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00477Q96M19 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00477Q96M19 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC12.85□□□□□ -0.35
LINC00477Q96M19 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC12.85□□□□□ -0.35
LINC00477Q96M19 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC12.85□□□□□ -0.35
LINC00477Q96M19 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC12.85□□□□□ -0.35
LINC00477Q96M19 CHCHD2P8-201ENST00000429873 447 ntBASIC12.85□□□□□ -0.35
LINC00477Q96M19 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC12.85□□□□□ -0.35
LINC00477Q96M19 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00477Q96M19 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC12.85□□□□□ -0.35
LINC00477Q96M19 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC12.85□□□□□ -0.35
LINC00477Q96M19 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC12.85□□□□□ -0.35
LINC00477Q96M19 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00477Q96M19 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00477Q96M19 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
LINC00477Q96M19 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00477Q96M19 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC12.85□□□□□ -0.35
LINC00477Q96M19 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00477Q96M19 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00477Q96M19 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00477Q96M19 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00477Q96M19 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC12.85□□□□□ -0.35
LINC00477Q96M19 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00477Q96M19 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC12.85□□□□□ -0.35
LINC00477Q96M19 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00477Q96M19 TUBB8P12-201ENST00000308911 1335 ntBASIC12.85□□□□□ -0.35
LINC00477Q96M19 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC12.85□□□□□ -0.35
LINC00477Q96M19 TUBB7P-202ENST00000428444 1305 ntBASIC12.85□□□□□ -0.35
LINC00477Q96M19 TUBB8P7-204ENST00000567960 1332 ntBASIC12.85□□□□□ -0.35
LINC00477Q96M19 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
LINC00477Q96M19 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC12.85□□□□□ -0.35
LINC00477Q96M19 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC12.85□□□□□ -0.35
LINC00477Q96M19 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00477Q96M19 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00477Q96M19 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00477Q96M19 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC12.84□□□□□ -0.35
LINC00477Q96M19 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC12.84□□□□□ -0.35
LINC00477Q96M19 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
LINC00477Q96M19 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00477Q96M19 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC12.84□□□□□ -0.35
LINC00477Q96M19 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC12.84□□□□□ -0.35
LINC00477Q96M19 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
LINC00477Q96M19 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00477Q96M19 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00477Q96M19 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00477Q96M19 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00477Q96M19 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
LINC00477Q96M19 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00477Q96M19 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00477Q96M19 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00477Q96M19 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC12.84□□□□□ -0.35
LINC00477Q96M19 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00477Q96M19 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC12.84□□□□□ -0.35
LINC00477Q96M19 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
LINC00477Q96M19 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00477Q96M19 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00477Q96M19 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC12.84□□□□□ -0.35
LINC00477Q96M19 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC12.84□□□□□ -0.35
LINC00477Q96M19 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC12.84□□□□□ -0.35
LINC00477Q96M19 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00477Q96M19 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00477Q96M19 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00477Q96M19 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
LINC00477Q96M19 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
LINC00477Q96M19 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00477Q96M19 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC12.84□□□□□ -0.35
LINC00477Q96M19 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00477Q96M19 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00477Q96M19 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00477Q96M19 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00477Q96M19 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00477Q96M19 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00477Q96M19 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
LINC00477Q96M19 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
LINC00477Q96M19 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
LINC00477Q96M19 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC12.83□□□□□ -0.35
LINC00477Q96M19 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.35
LINC00477Q96M19 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.35
LINC00477Q96M19 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC12.83□□□□□ -0.35
LINC00477Q96M19 FRMD8P1-201ENST00000440433 1524 ntBASIC12.83□□□□□ -0.35
LINC00477Q96M19 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC12.83□□□□□ -0.36
LINC00477Q96M19 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
LINC00477Q96M19 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC12.83□□□□□ -0.36
LINC00477Q96M19 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC12.83□□□□□ -0.36
LINC00477Q96M19 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC12.83□□□□□ -0.36
LINC00477Q96M19 AL603756.1-201ENST00000606511 2163 ntBASIC12.83□□□□□ -0.36
LINC00477Q96M19 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00477Q96M19 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC12.83□□□□□ -0.36
LINC00477Q96M19 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00477Q96M19 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC12.83□□□□□ -0.36
LINC00477Q96M19 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00477Q96M19 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms