Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 HMGA1P7-201ENST00000406908 502 ntBASIC16.6■□□□□ 0.25
LMX1AQ8TE12 AC005237.2-201ENST00000434368 219 ntBASIC16.6■□□□□ 0.25
LMX1AQ8TE12 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 KRT8P48-201ENST00000515599 1220 ntBASIC16.6■□□□□ 0.25
LMX1AQ8TE12 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 LINC02084-201ENST00000606069 1096 ntBASIC16.6■□□□□ 0.25
LMX1AQ8TE12 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 AC012569.1-201ENST00000591191 1524 ntBASIC16.6■□□□□ 0.25
LMX1AQ8TE12 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 MIR770-201ENST00000390219 98 ntBASIC16.59■□□□□ 0.25
LMX1AQ8TE12 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 AC025678.2-201ENST00000562061 970 ntBASIC16.59■□□□□ 0.25
LMX1AQ8TE12 LSM12-202ENST00000585388 942 ntTSL 3 BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 LINC00628-201ENST00000628516 1289 ntBASIC16.59■□□□□ 0.25
LMX1AQ8TE12 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.59■□□□□ 0.25
LMX1AQ8TE12 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.58■□□□□ 0.25
LMX1AQ8TE12 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
LMX1AQ8TE12 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.58■□□□□ 0.25
LMX1AQ8TE12 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
LMX1AQ8TE12 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
LMX1AQ8TE12 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
LMX1AQ8TE12 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
LMX1AQ8TE12 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
LMX1AQ8TE12 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.58■□□□□ 0.25
LMX1AQ8TE12 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
LMX1AQ8TE12 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
LMX1AQ8TE12 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC16.58■□□□□ 0.24
LMX1AQ8TE12 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LMX1AQ8TE12 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
LMX1AQ8TE12 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LMX1AQ8TE12 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LMX1AQ8TE12 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.58■□□□□ 0.24
LMX1AQ8TE12 TFAMP1-201ENST00000412727 736 ntBASIC16.58■□□□□ 0.24
LMX1AQ8TE12 AL627223.1-201ENST00000416693 442 ntBASIC16.58■□□□□ 0.24
LMX1AQ8TE12 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC16.58■□□□□ 0.24
LMX1AQ8TE12 AL592309.1-201ENST00000443127 649 ntBASIC16.58■□□□□ 0.24
LMX1AQ8TE12 HLA-J-203ENST00000494367 1087 ntBASIC16.58■□□□□ 0.24
LMX1AQ8TE12 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.58■□□□□ 0.24
LMX1AQ8TE12 AC109322.1-201ENST00000524499 1264 ntBASIC16.58■□□□□ 0.24
LMX1AQ8TE12 THTPA-204ENST00000554970 569 ntTSL 4 BASIC16.58■□□□□ 0.24
LMX1AQ8TE12 THTPA-206ENST00000556015 535 ntTSL 3 BASIC16.58■□□□□ 0.24
LMX1AQ8TE12 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LMX1AQ8TE12 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.58■□□□□ 0.24
LMX1AQ8TE12 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LMX1AQ8TE12 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.58■□□□□ 0.24
LMX1AQ8TE12 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
LMX1AQ8TE12 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.58■□□□□ 0.24
LMX1AQ8TE12 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
LMX1AQ8TE12 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LMX1AQ8TE12 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.58■□□□□ 0.24
LMX1AQ8TE12 AC008764.6-201ENST00000595909 2069 ntBASIC16.58■□□□□ 0.24
LMX1AQ8TE12 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
LMX1AQ8TE12 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms