Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 ABR-204ENST00000543210 1049 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 ABR-217ENST00000572441 563 ntTSL 4 BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 ACE-204ENST00000428043 5120 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC54Q8NEL0 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 GPR89P-201ENST00000407924 1495 ntBASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 KLF4P1-201ENST00000412782 1185 ntBASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 SRP19-202ENST00000445150 833 ntTSL 2 BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 Z69720.1-201ENST00000601483 472 ntBASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 NDUFV2-AS1-203ENST00000608008 779 ntBASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
CCDC54Q8NEL0 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
CCDC54Q8NEL0 AC011676.5-201ENST00000624864 2660 ntBASIC14.96□□□□□ -0.02
CCDC54Q8NEL0 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CCDC54Q8NEL0 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
CCDC54Q8NEL0 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 ANKRD26P3-201ENST00000454044 2748 ntBASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 AC105020.1-201ENST00000435356 2205 ntBASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 AL135999.2-201ENST00000622438 1686 ntBASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
CCDC54Q8NEL0 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms