Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC142381.1-201ENST00000426099 345 ntBASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 MFF-223ENST00000524634 647 ntTSL 2 BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 AL135999.2-201ENST00000622438 1686 ntBASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 CD81-207ENST00000481687 890 ntTSL 2 BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 AL589739.1-201ENST00000607720 493 ntBASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 AC116562.4-201ENST00000641316 2276 ntBASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMC1BQ8NDV3 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 RPL37AP1-201ENST00000412502 279 ntBASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 AL138918.1-201ENST00000568306 659 ntBASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMC1BQ8NDV3 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMC1BQ8NDV3 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMC1BQ8NDV3 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMC1BQ8NDV3 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
SMC1BQ8NDV3 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMC1BQ8NDV3 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMC1BQ8NDV3 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms