Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 HLA-B-256ENST00000639848 1089 ntBASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 AC106881.1-201ENST00000605849 3329 ntBASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 RCC2P6-201ENST00000526625 1557 ntBASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 RNF216P1-203ENST00000404404 2427 ntBASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 TUBB8P6-201ENST00000436895 1288 ntBASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 GUSBP6-202ENST00000438529 1198 ntBASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 ABHD17AP6-201ENST00000458502 1044 ntBASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 RPS2P52-201ENST00000469610 820 ntBASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 AC068587.9-201ENST00000641814 219 ntBASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 AC078925.2-201ENST00000624013 1973 ntBASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 OR2I1P-209ENST00000641730 5365 ntBASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28AQ8IWP9 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC14.33□□□□□ -0.11
CCDC28AQ8IWP9 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.33□□□□□ -0.11
CCDC28AQ8IWP9 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC14.33□□□□□ -0.11
CCDC28AQ8IWP9 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
CCDC28AQ8IWP9 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC14.33□□□□□ -0.11
CCDC28AQ8IWP9 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC14.33□□□□□ -0.11
CCDC28AQ8IWP9 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
CCDC28AQ8IWP9 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC14.33□□□□□ -0.11
CCDC28AQ8IWP9 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CCDC28AQ8IWP9 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
CCDC28AQ8IWP9 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 AC069152.1-201ENST00000438030 544 ntBASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 AC060766.5-201ENST00000590539 871 ntBASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 AC006557.6-201ENST00000623071 864 ntBASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms