Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
HSPG2P98160 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
HSPG2P98160 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
HSPG2P98160 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC10.41□□□□□ -0.74
HSPG2P98160 AC073439.1-201ENST00000624121 1774 ntBASIC10.41□□□□□ -0.74
HSPG2P98160 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC10.41□□□□□ -0.74
HSPG2P98160 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
HSPG2P98160 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
HSPG2P98160 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
HSPG2P98160 STX1A-203ENST00000395155 783 ntTSL 2 BASIC10.41□□□□□ -0.74
HSPG2P98160 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
HSPG2P98160 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
HSPG2P98160 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
HSPG2P98160 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
HSPG2P98160 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC10.41□□□□□ -0.74
HSPG2P98160 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC10.41□□□□□ -0.74
HSPG2P98160 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC10.41□□□□□ -0.74
HSPG2P98160 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
HSPG2P98160 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC10.41□□□□□ -0.74
HSPG2P98160 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
HSPG2P98160 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
HSPG2P98160 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
HSPG2P98160 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
HSPG2P98160 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
HSPG2P98160 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC10.41□□□□□ -0.74
HSPG2P98160 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
HSPG2P98160 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
HSPG2P98160 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
HSPG2P98160 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC10.41□□□□□ -0.74
HSPG2P98160 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC10.41□□□□□ -0.74
HSPG2P98160 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC10.41□□□□□ -0.74
HSPG2P98160 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC10.41□□□□□ -0.74
HSPG2P98160 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC10.41□□□□□ -0.74
HSPG2P98160 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC10.41□□□□□ -0.74
HSPG2P98160 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
HSPG2P98160 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
HSPG2P98160 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
HSPG2P98160 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC10.41□□□□□ -0.74
HSPG2P98160 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC10.41□□□□□ -0.74
HSPG2P98160 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
HSPG2P98160 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
HSPG2P98160 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC10.41□□□□□ -0.74
HSPG2P98160 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
HSPG2P98160 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
HSPG2P98160 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC10.41□□□□□ -0.74
HSPG2P98160 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
HSPG2P98160 BRWD1P1-201ENST00000401091 371 ntBASIC10.41□□□□□ -0.74
HSPG2P98160 KLF2P4-201ENST00000451959 1225 ntBASIC10.41□□□□□ -0.74
HSPG2P98160 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC10.41□□□□□ -0.74
HSPG2P98160 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC10.41□□□□□ -0.74
HSPG2P98160 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC10.41□□□□□ -0.74
HSPG2P98160 NOC2LP1-202ENST00000452600 2235 ntBASIC10.41□□□□□ -0.74
HSPG2P98160 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
HSPG2P98160 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
HSPG2P98160 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC10.4□□□□□ -0.74
HSPG2P98160 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC10.4□□□□□ -0.74
HSPG2P98160 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
HSPG2P98160 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
HSPG2P98160 BTBD6P1-201ENST00000412176 1267 ntBASIC10.4□□□□□ -0.74
HSPG2P98160 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC10.4□□□□□ -0.74
HSPG2P98160 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
HSPG2P98160 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC10.4□□□□□ -0.74
HSPG2P98160 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC10.4□□□□□ -0.74
HSPG2P98160 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC10.4□□□□□ -0.74
HSPG2P98160 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC10.4□□□□□ -0.74
HSPG2P98160 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC10.4□□□□□ -0.74
HSPG2P98160 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC10.4□□□□□ -0.74
HSPG2P98160 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC10.4□□□□□ -0.74
HSPG2P98160 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC10.4□□□□□ -0.74
HSPG2P98160 WT1-AS_2.1-201ENST00000613208 137 ntBASIC10.4□□□□□ -0.74
HSPG2P98160 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC10.4□□□□□ -0.74
HSPG2P98160 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
HSPG2P98160 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC10.4□□□□□ -0.74
HSPG2P98160 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC10.4□□□□□ -0.74
HSPG2P98160 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
HSPG2P98160 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
HSPG2P98160 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
HSPG2P98160 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC10.4□□□□□ -0.74
HSPG2P98160 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC10.4□□□□□ -0.74
HSPG2P98160 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
HSPG2P98160 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC10.4□□□□□ -0.74
HSPG2P98160 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC10.4□□□□□ -0.74
HSPG2P98160 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC10.4□□□□□ -0.74
HSPG2P98160 RHOA-206ENST00000454011 889 ntTSL 2 BASIC10.4□□□□□ -0.74
HSPG2P98160 FADS2-205ENST00000517839 469 ntTSL 3 BASIC10.4□□□□□ -0.74
HSPG2P98160 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC10.4□□□□□ -0.74
HSPG2P98160 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC10.4□□□□□ -0.74
HSPG2P98160 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.75
HSPG2P98160 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.75
HSPG2P98160 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC10.4□□□□□ -0.75
HSPG2P98160 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.75
HSPG2P98160 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
HSPG2P98160 FAM220BP-201ENST00000377689 816 ntBASIC10.4□□□□□ -0.75
HSPG2P98160 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC10.4□□□□□ -0.75
HSPG2P98160 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC10.4□□□□□ -0.75
HSPG2P98160 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC10.4□□□□□ -0.75
HSPG2P98160 BCRP2-202ENST00000447763 634 ntBASIC10.4□□□□□ -0.75
HSPG2P98160 CTBP2P5-201ENST00000454986 1264 ntBASIC10.4□□□□□ -0.75
HSPG2P98160 BCRP6-201ENST00000510112 632 ntBASIC10.4□□□□□ -0.75
HSPG2P98160 BCRP7-201ENST00000511549 544 ntBASIC10.4□□□□□ -0.75
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms