Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.69■□□□□ 0.26
YBX1P67809 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.69■□□□□ 0.26
YBX1P67809 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
YBX1P67809 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.69■□□□□ 0.26
YBX1P67809 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
YBX1P67809 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
YBX1P67809 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
YBX1P67809 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.69■□□□□ 0.26
YBX1P67809 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.69■□□□□ 0.26
YBX1P67809 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
YBX1P67809 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC16.69■□□□□ 0.26
YBX1P67809 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
YBX1P67809 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
YBX1P67809 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
YBX1P67809 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.69■□□□□ 0.26
YBX1P67809 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
YBX1P67809 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
YBX1P67809 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
YBX1P67809 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
YBX1P67809 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
YBX1P67809 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
YBX1P67809 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.69■□□□□ 0.26
YBX1P67809 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
YBX1P67809 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
YBX1P67809 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
YBX1P67809 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
YBX1P67809 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
YBX1P67809 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
YBX1P67809 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.68■□□□□ 0.26
YBX1P67809 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
YBX1P67809 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
YBX1P67809 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
YBX1P67809 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
YBX1P67809 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
YBX1P67809 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
YBX1P67809 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.68■□□□□ 0.26
YBX1P67809 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
YBX1P67809 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
YBX1P67809 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.68■□□□□ 0.26
YBX1P67809 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
YBX1P67809 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
YBX1P67809 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC16.68■□□□□ 0.26
YBX1P67809 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
YBX1P67809 LINC00982-205ENST00000420957 435 ntBASIC16.68■□□□□ 0.26
YBX1P67809 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
YBX1P67809 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.68■□□□□ 0.26
YBX1P67809 AC073648.2-201ENST00000510116 352 ntBASIC16.68■□□□□ 0.26
YBX1P67809 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.68■□□□□ 0.26
YBX1P67809 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.68■□□□□ 0.26
YBX1P67809 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.68■□□□□ 0.26
YBX1P67809 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
YBX1P67809 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
YBX1P67809 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
YBX1P67809 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
YBX1P67809 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.68■□□□□ 0.26
YBX1P67809 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.68■□□□□ 0.26
YBX1P67809 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
YBX1P67809 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
YBX1P67809 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
YBX1P67809 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
YBX1P67809 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.68■□□□□ 0.26
YBX1P67809 HLA-A-201ENST00000376802 1334 ntBASIC16.68■□□□□ 0.26
YBX1P67809 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
YBX1P67809 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
YBX1P67809 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
YBX1P67809 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.67■□□□□ 0.26
YBX1P67809 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
YBX1P67809 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
YBX1P67809 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
YBX1P67809 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
YBX1P67809 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
YBX1P67809 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
YBX1P67809 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
YBX1P67809 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.67■□□□□ 0.26
YBX1P67809 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
YBX1P67809 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.67■□□□□ 0.26
YBX1P67809 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
YBX1P67809 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.67■□□□□ 0.26
YBX1P67809 MIR7706-201ENST00000613747 67 ntBASIC16.67■□□□□ 0.26
YBX1P67809 FAM215A-202ENST00000632077 792 ntBASIC16.67■□□□□ 0.26
YBX1P67809 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
YBX1P67809 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
YBX1P67809 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
YBX1P67809 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
YBX1P67809 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
YBX1P67809 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
YBX1P67809 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.67■□□□□ 0.26
YBX1P67809 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
YBX1P67809 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
YBX1P67809 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
YBX1P67809 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
YBX1P67809 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
YBX1P67809 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
YBX1P67809 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
YBX1P67809 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
YBX1P67809 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
YBX1P67809 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
YBX1P67809 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
YBX1P67809 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
YBX1P67809 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms