Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.47■□□□□ 0.87
BRCA1P38398 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
BRCA1P38398 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC20.47■□□□□ 0.87
BRCA1P38398 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
BRCA1P38398 AL589987.1-201ENST00000453380 819 ntBASIC20.47■□□□□ 0.87
BRCA1P38398 AC123567.1-201ENST00000548294 1261 ntBASIC20.47■□□□□ 0.87
BRCA1P38398 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
BRCA1P38398 AC010319.3-201ENST00000597028 470 ntBASIC20.47■□□□□ 0.87
BRCA1P38398 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
BRCA1P38398 TECR-220ENST00000600083 1204 ntTSL 2 BASIC20.47■□□□□ 0.87
BRCA1P38398 KRT8P12-202ENST00000472924 1397 ntBASIC20.47■□□□□ 0.87
BRCA1P38398 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
BRCA1P38398 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC20.47■□□□□ 0.87
BRCA1P38398 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC20.47■□□□□ 0.87
BRCA1P38398 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
BRCA1P38398 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
BRCA1P38398 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC20.46■□□□□ 0.87
BRCA1P38398 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
BRCA1P38398 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
BRCA1P38398 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC20.46■□□□□ 0.87
BRCA1P38398 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
BRCA1P38398 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
BRCA1P38398 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC20.46■□□□□ 0.87
BRCA1P38398 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC20.46■□□□□ 0.87
BRCA1P38398 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC20.46■□□□□ 0.87
BRCA1P38398 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC20.46■□□□□ 0.87
BRCA1P38398 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC20.46■□□□□ 0.87
BRCA1P38398 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
BRCA1P38398 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
BRCA1P38398 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
BRCA1P38398 GOLGA2P9-201ENST00000596977 1937 ntBASIC20.46■□□□□ 0.87
BRCA1P38398 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC20.46■□□□□ 0.87
BRCA1P38398 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
BRCA1P38398 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.87
BRCA1P38398 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
BRCA1P38398 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC20.45■□□□□ 0.86
BRCA1P38398 MIR1908-201ENST00000410394 80 ntBASIC20.45■□□□□ 0.86
BRCA1P38398 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC20.45■□□□□ 0.86
BRCA1P38398 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.45■□□□□ 0.86
BRCA1P38398 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC20.45■□□□□ 0.86
BRCA1P38398 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
BRCA1P38398 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
BRCA1P38398 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
BRCA1P38398 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
BRCA1P38398 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC20.45■□□□□ 0.86
BRCA1P38398 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
BRCA1P38398 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
BRCA1P38398 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
BRCA1P38398 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
BRCA1P38398 CROCCP4-201ENST00000457096 498 ntBASIC20.45■□□□□ 0.86
BRCA1P38398 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
BRCA1P38398 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC20.45■□□□□ 0.86
BRCA1P38398 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC20.45■□□□□ 0.86
BRCA1P38398 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC20.45■□□□□ 0.86
BRCA1P38398 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
BRCA1P38398 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
BRCA1P38398 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
BRCA1P38398 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
BRCA1P38398 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
BRCA1P38398 PODN-203ENST00000395871 2744 ntTSL 5 BASIC20.45■□□□□ 0.86
BRCA1P38398 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC20.44■□□□□ 0.86
BRCA1P38398 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
BRCA1P38398 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
BRCA1P38398 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
BRCA1P38398 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC20.44■□□□□ 0.86
BRCA1P38398 NOC2LP1-202ENST00000452600 2235 ntBASIC20.44■□□□□ 0.86
BRCA1P38398 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
BRCA1P38398 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
BRCA1P38398 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
BRCA1P38398 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
BRCA1P38398 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
BRCA1P38398 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
BRCA1P38398 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC20.44■□□□□ 0.86
BRCA1P38398 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC20.44■□□□□ 0.86
BRCA1P38398 AC092337.1-201ENST00000568699 1129 ntBASIC20.44■□□□□ 0.86
BRCA1P38398 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
BRCA1P38398 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC20.44■□□□□ 0.86
BRCA1P38398 AC015936.2-201ENST00000593177 259 ntBASIC20.44■□□□□ 0.86
BRCA1P38398 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC20.44■□□□□ 0.86
BRCA1P38398 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC20.44■□□□□ 0.86
BRCA1P38398 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC20.44■□□□□ 0.86
BRCA1P38398 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
BRCA1P38398 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
BRCA1P38398 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
BRCA1P38398 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
BRCA1P38398 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
BRCA1P38398 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
BRCA1P38398 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
BRCA1P38398 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
BRCA1P38398 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC20.43■□□□□ 0.86
BRCA1P38398 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC20.43■□□□□ 0.86
BRCA1P38398 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
BRCA1P38398 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC20.43■□□□□ 0.86
BRCA1P38398 GPR182-203ENST00000622922 591 ntBASIC20.43■□□□□ 0.86
BRCA1P38398 AC004461.2-201ENST00000629517 803 ntBASIC20.43■□□□□ 0.86
BRCA1P38398 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
BRCA1P38398 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
BRCA1P38398 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
BRCA1P38398 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
BRCA1P38398 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms