Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC027369.6-201ENST00000525520 931 ntBASIC16.22■□□□□ 0.19
COL5A1P20908 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC16.22■□□□□ 0.19
COL5A1P20908 AL596325.1-201ENST00000563991 1082 ntBASIC16.22■□□□□ 0.19
COL5A1P20908 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL5A1P20908 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.21■□□□□ 0.19
COL5A1P20908 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
COL5A1P20908 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL5A1P20908 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.21■□□□□ 0.19
COL5A1P20908 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL5A1P20908 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.21■□□□□ 0.19
COL5A1P20908 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
COL5A1P20908 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL5A1P20908 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.21■□□□□ 0.19
COL5A1P20908 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.21■□□□□ 0.19
COL5A1P20908 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.21■□□□□ 0.19
COL5A1P20908 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
COL5A1P20908 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
COL5A1P20908 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.21■□□□□ 0.19
COL5A1P20908 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL5A1P20908 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
COL5A1P20908 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL5A1P20908 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.21■□□□□ 0.19
COL5A1P20908 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.21■□□□□ 0.19
COL5A1P20908 FAM220BP-201ENST00000377689 816 ntBASIC16.21■□□□□ 0.19
COL5A1P20908 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC16.21■□□□□ 0.19
COL5A1P20908 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC16.21■□□□□ 0.19
COL5A1P20908 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
COL5A1P20908 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.21■□□□□ 0.19
COL5A1P20908 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL5A1P20908 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.2■□□□□ 0.18
COL5A1P20908 LINC00895-201ENST00000629028 1637 ntBASIC16.2■□□□□ 0.18
COL5A1P20908 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL5A1P20908 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC16.2■□□□□ 0.18
COL5A1P20908 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL5A1P20908 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.2■□□□□ 0.18
COL5A1P20908 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
COL5A1P20908 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL5A1P20908 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL5A1P20908 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.2■□□□□ 0.18
COL5A1P20908 AC009477.1-201ENST00000452936 217 ntBASIC16.2■□□□□ 0.18
COL5A1P20908 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL5A1P20908 RARRES2P9-201ENST00000565168 469 ntBASIC16.2■□□□□ 0.18
COL5A1P20908 AL662799.1-202ENST00000614205 422 ntBASIC16.2■□□□□ 0.18
COL5A1P20908 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL5A1P20908 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.2■□□□□ 0.18
COL5A1P20908 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL5A1P20908 CU639417.3-201ENST00000624240 1404 ntBASIC16.2■□□□□ 0.18
COL5A1P20908 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL5A1P20908 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL5A1P20908 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
COL5A1P20908 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
COL5A1P20908 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.19■□□□□ 0.18
COL5A1P20908 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL5A1P20908 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL5A1P20908 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC16.19■□□□□ 0.18
COL5A1P20908 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL5A1P20908 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL5A1P20908 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.19■□□□□ 0.18
COL5A1P20908 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC16.19■□□□□ 0.18
COL5A1P20908 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC16.19■□□□□ 0.18
COL5A1P20908 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC16.19■□□□□ 0.18
COL5A1P20908 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC16.19■□□□□ 0.18
COL5A1P20908 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
COL5A1P20908 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL5A1P20908 AP3S2-216ENST00000617003 1561 ntBASIC16.19■□□□□ 0.18
COL5A1P20908 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL5A1P20908 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
COL5A1P20908 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL5A1P20908 TOP3BP1-201ENST00000420768 1380 ntBASIC16.19■□□□□ 0.18
COL5A1P20908 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
COL5A1P20908 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.19■□□□□ 0.18
COL5A1P20908 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL5A1P20908 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL5A1P20908 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL5A1P20908 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC16.19■□□□□ 0.18
COL5A1P20908 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL5A1P20908 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL5A1P20908 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL5A1P20908 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL5A1P20908 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.19■□□□□ 0.18
COL5A1P20908 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC16.19■□□□□ 0.18
COL5A1P20908 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL5A1P20908 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC16.19■□□□□ 0.18
COL5A1P20908 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
COL5A1P20908 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC16.19■□□□□ 0.18
COL5A1P20908 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL5A1P20908 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
COL5A1P20908 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.18■□□□□ 0.18
COL5A1P20908 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL5A1P20908 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.18■□□□□ 0.18
COL5A1P20908 SPTLC1P1-201ENST00000447199 261 ntBASIC16.18■□□□□ 0.18
COL5A1P20908 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC16.18■□□□□ 0.18
COL5A1P20908 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.18■□□□□ 0.18
COL5A1P20908 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC16.18■□□□□ 0.18
COL5A1P20908 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.18■□□□□ 0.18
COL5A1P20908 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL5A1P20908 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC16.18■□□□□ 0.18
COL5A1P20908 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL5A1P20908 AC018529.1-201ENST00000613063 361 ntBASIC16.18■□□□□ 0.18
COL5A1P20908 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms