Protein–RNA interactions for Protein: P19838

NFKB1, Nuclear factor NF-kappa-B p105 subunit, humanhuman

Predictions only

Length 968 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1P19838 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
NFKB1P19838 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.41■□□□□ 0.38
NFKB1P19838 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
NFKB1P19838 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
NFKB1P19838 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.41■□□□□ 0.38
NFKB1P19838 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
NFKB1P19838 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NFKB1P19838 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
NFKB1P19838 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
NFKB1P19838 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
NFKB1P19838 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.4■□□□□ 0.38
NFKB1P19838 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.4■□□□□ 0.38
NFKB1P19838 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
NFKB1P19838 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NFKB1P19838 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
NFKB1P19838 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NFKB1P19838 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
NFKB1P19838 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NFKB1P19838 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
NFKB1P19838 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
NFKB1P19838 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NFKB1P19838 AP002414.1-201ENST00000391405 1147 ntBASIC17.4■□□□□ 0.38
NFKB1P19838 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.4■□□□□ 0.38
NFKB1P19838 EMBP1-201ENST00000458200 901 ntBASIC17.4■□□□□ 0.38
NFKB1P19838 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.4■□□□□ 0.38
NFKB1P19838 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.4■□□□□ 0.38
NFKB1P19838 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.4■□□□□ 0.38
NFKB1P19838 AC139887.3-201ENST00000568585 713 ntBASIC17.4■□□□□ 0.38
NFKB1P19838 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
NFKB1P19838 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.4■□□□□ 0.38
NFKB1P19838 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.4■□□□□ 0.38
NFKB1P19838 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
NFKB1P19838 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NFKB1P19838 AC084018.2-201ENST00000613093 2607 ntBASIC17.4■□□□□ 0.38
NFKB1P19838 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
NFKB1P19838 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NFKB1P19838 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
NFKB1P19838 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.4■□□□□ 0.38
NFKB1P19838 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
NFKB1P19838 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NFKB1P19838 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.4■□□□□ 0.38
NFKB1P19838 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
NFKB1P19838 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.4■□□□□ 0.38
NFKB1P19838 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NFKB1P19838 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NFKB1P19838 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.38
NFKB1P19838 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.39■□□□□ 0.38
NFKB1P19838 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.38
NFKB1P19838 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NFKB1P19838 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NFKB1P19838 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.39■□□□□ 0.37
NFKB1P19838 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
NFKB1P19838 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
NFKB1P19838 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NFKB1P19838 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
NFKB1P19838 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.39■□□□□ 0.37
NFKB1P19838 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC17.39■□□□□ 0.37
NFKB1P19838 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
NFKB1P19838 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
NFKB1P19838 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
NFKB1P19838 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NFKB1P19838 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NFKB1P19838 OR6D1P-203ENST00000641209 4860 ntBASIC17.39■□□□□ 0.37
NFKB1P19838 AC243591.1-201ENST00000452967 1364 ntBASIC17.39■□□□□ 0.37
NFKB1P19838 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
NFKB1P19838 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
NFKB1P19838 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.39■□□□□ 0.37
NFKB1P19838 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
NFKB1P19838 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.39■□□□□ 0.37
NFKB1P19838 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
NFKB1P19838 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
NFKB1P19838 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.38■□□□□ 0.37
NFKB1P19838 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NFKB1P19838 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.38■□□□□ 0.37
NFKB1P19838 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
NFKB1P19838 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
NFKB1P19838 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
NFKB1P19838 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
NFKB1P19838 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
NFKB1P19838 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.38■□□□□ 0.37
NFKB1P19838 FLJ38576-201ENST00000623820 2459 ntBASIC17.38■□□□□ 0.37
NFKB1P19838 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
NFKB1P19838 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
NFKB1P19838 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.38■□□□□ 0.37
NFKB1P19838 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NFKB1P19838 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NFKB1P19838 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
NFKB1P19838 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.38■□□□□ 0.37
NFKB1P19838 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.38■□□□□ 0.37
NFKB1P19838 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NFKB1P19838 TOLLIP-AS1-201ENST00000530897 939 ntBASIC17.38■□□□□ 0.37
NFKB1P19838 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
NFKB1P19838 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.38■□□□□ 0.37
NFKB1P19838 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.38■□□□□ 0.37
NFKB1P19838 DUX4L17-201ENST00000557360 1267 ntBASIC17.38■□□□□ 0.37
NFKB1P19838 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.38■□□□□ 0.37
NFKB1P19838 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.38■□□□□ 0.37
NFKB1P19838 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.38■□□□□ 0.37
NFKB1P19838 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
NFKB1P19838 TP73-AS1-207ENST00000624167 988 ntBASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms