Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC20.17■□□□□ 0.82
HMGB1P09429 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC20.17■□□□□ 0.82
HMGB1P09429 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC20.16■□□□□ 0.82
HMGB1P09429 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HMGB1P09429 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
HMGB1P09429 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HMGB1P09429 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC20.16■□□□□ 0.82
HMGB1P09429 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
HMGB1P09429 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HMGB1P09429 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HMGB1P09429 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC20.16■□□□□ 0.82
HMGB1P09429 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HMGB1P09429 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HMGB1P09429 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC20.16■□□□□ 0.82
HMGB1P09429 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC20.16■□□□□ 0.82
HMGB1P09429 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC20.16■□□□□ 0.82
HMGB1P09429 PAM16-208ENST00000573553 722 ntTSL 2 BASIC20.16■□□□□ 0.82
HMGB1P09429 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
HMGB1P09429 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HMGB1P09429 AL121912.1-201ENST00000603683 238 ntBASIC20.16■□□□□ 0.82
HMGB1P09429 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
HMGB1P09429 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC20.16■□□□□ 0.82
HMGB1P09429 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
HMGB1P09429 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HMGB1P09429 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
HMGB1P09429 PCDHB17P-201ENST00000539533 2393 ntBASIC20.16■□□□□ 0.82
HMGB1P09429 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC20.16■□□□□ 0.82
HMGB1P09429 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC20.16■□□□□ 0.82
HMGB1P09429 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HMGB1P09429 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
HMGB1P09429 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HMGB1P09429 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC20.15■□□□□ 0.82
HMGB1P09429 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HMGB1P09429 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HMGB1P09429 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HMGB1P09429 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HMGB1P09429 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HMGB1P09429 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HMGB1P09429 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
HMGB1P09429 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC20.15■□□□□ 0.82
HMGB1P09429 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HMGB1P09429 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HMGB1P09429 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC20.15■□□□□ 0.82
HMGB1P09429 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HMGB1P09429 EMBP1-201ENST00000458200 901 ntBASIC20.15■□□□□ 0.82
HMGB1P09429 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC20.15■□□□□ 0.82
HMGB1P09429 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC20.15■□□□□ 0.82
HMGB1P09429 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
HMGB1P09429 ABBA01031661.1-201ENST00000634362 1253 ntBASIC20.15■□□□□ 0.82
HMGB1P09429 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC20.15■□□□□ 0.82
HMGB1P09429 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
HMGB1P09429 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HMGB1P09429 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC20.15■□□□□ 0.82
HMGB1P09429 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HMGB1P09429 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HMGB1P09429 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HMGB1P09429 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HMGB1P09429 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
HMGB1P09429 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HMGB1P09429 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HMGB1P09429 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HMGB1P09429 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HMGB1P09429 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC20.14■□□□□ 0.82
HMGB1P09429 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
HMGB1P09429 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HMGB1P09429 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
HMGB1P09429 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
HMGB1P09429 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
HMGB1P09429 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HMGB1P09429 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HMGB1P09429 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC20.14■□□□□ 0.81
HMGB1P09429 KRT8P49-201ENST00000604166 1432 ntBASIC20.14■□□□□ 0.81
HMGB1P09429 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
HMGB1P09429 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC20.14■□□□□ 0.81
HMGB1P09429 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
HMGB1P09429 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC20.14■□□□□ 0.81
HMGB1P09429 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
HMGB1P09429 PTCHD3P3-201ENST00000403073 906 ntBASIC20.14■□□□□ 0.81
HMGB1P09429 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
HMGB1P09429 RNPS1P1-201ENST00000507437 918 ntBASIC20.14■□□□□ 0.81
HMGB1P09429 OR7E14P-202ENST00000530490 1290 ntBASIC20.14■□□□□ 0.81
HMGB1P09429 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC20.14■□□□□ 0.81
HMGB1P09429 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC20.14■□□□□ 0.81
HMGB1P09429 AL805961.1-202ENST00000641562 540 ntBASIC20.14■□□□□ 0.81
HMGB1P09429 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HMGB1P09429 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
HMGB1P09429 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HMGB1P09429 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
HMGB1P09429 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
HMGB1P09429 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC20.14■□□□□ 0.81
HMGB1P09429 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
HMGB1P09429 AC078925.2-201ENST00000624013 1973 ntBASIC20.14■□□□□ 0.81
HMGB1P09429 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC20.14■□□□□ 0.81
HMGB1P09429 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
HMGB1P09429 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGB1P09429 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HMGB1P09429 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HMGB1P09429 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC20.13■□□□□ 0.81
HMGB1P09429 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGB1P09429 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms