Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.11■□□□□ 0.17
LDB3O75112 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LDB3O75112 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
LDB3O75112 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.11■□□□□ 0.17
LDB3O75112 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LDB3O75112 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
LDB3O75112 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.11■□□□□ 0.17
LDB3O75112 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
LDB3O75112 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.11■□□□□ 0.17
LDB3O75112 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
LDB3O75112 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.11■□□□□ 0.17
LDB3O75112 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.11■□□□□ 0.17
LDB3O75112 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.11■□□□□ 0.17
LDB3O75112 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
LDB3O75112 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
LDB3O75112 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.11■□□□□ 0.17
LDB3O75112 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LDB3O75112 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LDB3O75112 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LDB3O75112 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LDB3O75112 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LDB3O75112 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LDB3O75112 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.11■□□□□ 0.17
LDB3O75112 PI4KAP1-204ENST00000612579 1703 ntBASIC16.11■□□□□ 0.17
LDB3O75112 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LDB3O75112 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LDB3O75112 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LDB3O75112 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LDB3O75112 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LDB3O75112 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LDB3O75112 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
LDB3O75112 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.1■□□□□ 0.17
LDB3O75112 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.1■□□□□ 0.17
LDB3O75112 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.1■□□□□ 0.17
LDB3O75112 RPS15P9-201ENST00000494093 319 ntBASIC16.1■□□□□ 0.17
LDB3O75112 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.1■□□□□ 0.17
LDB3O75112 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.1■□□□□ 0.17
LDB3O75112 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC16.1■□□□□ 0.17
LDB3O75112 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.1■□□□□ 0.17
LDB3O75112 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.1■□□□□ 0.17
LDB3O75112 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
LDB3O75112 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
LDB3O75112 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.1■□□□□ 0.17
LDB3O75112 AC117500.6-201ENST00000624871 588 ntBASIC16.1■□□□□ 0.17
LDB3O75112 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LDB3O75112 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LDB3O75112 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LDB3O75112 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
LDB3O75112 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LDB3O75112 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LDB3O75112 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LDB3O75112 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LDB3O75112 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.1■□□□□ 0.17
LDB3O75112 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LDB3O75112 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LDB3O75112 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
LDB3O75112 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LDB3O75112 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
LDB3O75112 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
LDB3O75112 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LDB3O75112 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.1■□□□□ 0.17
LDB3O75112 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.09■□□□□ 0.17
LDB3O75112 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDB3O75112 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDB3O75112 FRMD8P1-201ENST00000440433 1524 ntBASIC16.09■□□□□ 0.17
LDB3O75112 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LDB3O75112 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LDB3O75112 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LDB3O75112 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDB3O75112 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDB3O75112 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.09■□□□□ 0.17
LDB3O75112 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDB3O75112 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDB3O75112 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC16.09■□□□□ 0.17
LDB3O75112 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.09■□□□□ 0.17
LDB3O75112 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LDB3O75112 AC098831.1-202ENST00000438821 336 ntBASIC16.09■□□□□ 0.17
LDB3O75112 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC16.09■□□□□ 0.17
LDB3O75112 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.09■□□□□ 0.17
LDB3O75112 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.09■□□□□ 0.17
LDB3O75112 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.09■□□□□ 0.17
LDB3O75112 AC005593.1-201ENST00000624894 515 ntBASIC16.09■□□□□ 0.17
LDB3O75112 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDB3O75112 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.09■□□□□ 0.17
LDB3O75112 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDB3O75112 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC16.09■□□□□ 0.17
LDB3O75112 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.09■□□□□ 0.17
LDB3O75112 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDB3O75112 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDB3O75112 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDB3O75112 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDB3O75112 AC022211.2-201ENST00000585075 2527 ntBASIC16.09■□□□□ 0.17
LDB3O75112 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
LDB3O75112 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.09■□□□□ 0.17
LDB3O75112 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.09■□□□□ 0.17
LDB3O75112 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDB3O75112 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.09■□□□□ 0.17
LDB3O75112 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
LDB3O75112 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.09■□□□□ 0.17
LDB3O75112 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms