Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC18.25■□□□□ 0.51
SMIM28A0A1B0GU29 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 KRT8P49-201ENST00000604166 1432 ntBASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 AC139713.2-201ENST00000641328 2723 ntBASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 AC002056.1-201ENST00000395613 760 ntBASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 AC124947.2-201ENST00000547118 1133 ntBASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 THTPA-204ENST00000554970 569 ntTSL 4 BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 THTPA-206ENST00000556015 535 ntTSL 3 BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 SNHG9-202ENST00000564014 471 ntBASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 AC091167.2-201ENST00000579581 588 ntBASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 AL021920.2-201ENST00000624828 1351 ntBASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMIM28A0A1B0GU29 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 HARS-204ENST00000438307 1789 ntTSL 2 BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms