Protein–RNA interactions for Protein: Q9BXA9

SALL3, Sal-like protein 3, humanhuman

Predictions only

Length 1,300 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SALL3Q9BXA9 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SALL3Q9BXA9 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SALL3Q9BXA9 PCDHA14-201ENST00000506751 2298 ntBASIC20.71■□□□□ 0.91
SALL3Q9BXA9 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC20.71■□□□□ 0.91
SALL3Q9BXA9 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC20.71■□□□□ 0.91
SALL3Q9BXA9 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SALL3Q9BXA9 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SALL3Q9BXA9 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SALL3Q9BXA9 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC20.71■□□□□ 0.91
SALL3Q9BXA9 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SALL3Q9BXA9 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SALL3Q9BXA9 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
SALL3Q9BXA9 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SALL3Q9BXA9 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
SALL3Q9BXA9 INIP-202ENST00000374236 874 ntTSL 2 BASIC20.71■□□□□ 0.91
SALL3Q9BXA9 AC092910.1-201ENST00000482027 1129 ntBASIC20.71■□□□□ 0.91
SALL3Q9BXA9 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC20.71■□□□□ 0.91
SALL3Q9BXA9 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC20.71■□□□□ 0.91
SALL3Q9BXA9 MMP17-203ENST00000535004 719 ntTSL 3 BASIC20.71■□□□□ 0.91
SALL3Q9BXA9 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC20.71■□□□□ 0.91
SALL3Q9BXA9 LITAF-211ENST00000572255 516 ntTSL 4 BASIC20.71■□□□□ 0.91
SALL3Q9BXA9 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
SALL3Q9BXA9 CYB561-216ENST00000582297 897 ntTSL 3 BASIC20.71■□□□□ 0.91
SALL3Q9BXA9 PGM5P2-202ENST00000637225 1043 ntBASIC20.71■□□□□ 0.91
SALL3Q9BXA9 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SALL3Q9BXA9 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SALL3Q9BXA9 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SALL3Q9BXA9 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SALL3Q9BXA9 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SALL3Q9BXA9 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SALL3Q9BXA9 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
SALL3Q9BXA9 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SALL3Q9BXA9 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SALL3Q9BXA9 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
SALL3Q9BXA9 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
SALL3Q9BXA9 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC20.7■□□□□ 0.9
SALL3Q9BXA9 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC20.7■□□□□ 0.9
SALL3Q9BXA9 AC009947.1-201ENST00000444350 727 ntBASIC20.7■□□□□ 0.9
SALL3Q9BXA9 AP001005.1-201ENST00000571755 1248 ntBASIC20.7■□□□□ 0.9
SALL3Q9BXA9 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC20.7■□□□□ 0.9
SALL3Q9BXA9 ACTL9-202ENST00000612068 1252 ntBASIC20.7■□□□□ 0.9
SALL3Q9BXA9 MIR1199-201ENST00000621445 119 ntBASIC20.7■□□□□ 0.9
SALL3Q9BXA9 AC004790.2-201ENST00000623588 572 ntBASIC20.7■□□□□ 0.9
SALL3Q9BXA9 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC20.7■□□□□ 0.9
SALL3Q9BXA9 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SALL3Q9BXA9 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC20.7■□□□□ 0.9
SALL3Q9BXA9 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC20.7■□□□□ 0.9
SALL3Q9BXA9 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC20.7■□□□□ 0.9
SALL3Q9BXA9 UBALD1-205ENST00000590891 2641 ntBASIC20.7■□□□□ 0.9
SALL3Q9BXA9 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
SALL3Q9BXA9 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
SALL3Q9BXA9 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
SALL3Q9BXA9 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC20.69■□□□□ 0.9
SALL3Q9BXA9 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
SALL3Q9BXA9 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SALL3Q9BXA9 AC124067.4-201ENST00000519691 2379 ntBASIC20.69■□□□□ 0.9
SALL3Q9BXA9 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
SALL3Q9BXA9 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC20.69■□□□□ 0.9
SALL3Q9BXA9 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC20.69■□□□□ 0.9
SALL3Q9BXA9 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SALL3Q9BXA9 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SALL3Q9BXA9 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SALL3Q9BXA9 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
SALL3Q9BXA9 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SALL3Q9BXA9 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SALL3Q9BXA9 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC20.69■□□□□ 0.9
SALL3Q9BXA9 IGLL3P-201ENST00000412472 434 ntBASIC20.69■□□□□ 0.9
SALL3Q9BXA9 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SALL3Q9BXA9 TPM4P1-201ENST00000436100 807 ntBASIC20.69■□□□□ 0.9
SALL3Q9BXA9 CD63-204ENST00000546939 779 ntTSL 3 BASIC20.69■□□□□ 0.9
SALL3Q9BXA9 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC20.69■□□□□ 0.9
SALL3Q9BXA9 AC091167.2-201ENST00000579581 588 ntBASIC20.69■□□□□ 0.9
SALL3Q9BXA9 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC20.69■□□□□ 0.9
SALL3Q9BXA9 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC20.69■□□□□ 0.9
SALL3Q9BXA9 ABBA01031661.1-201ENST00000634362 1253 ntBASIC20.69■□□□□ 0.9
SALL3Q9BXA9 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC20.69■□□□□ 0.9
SALL3Q9BXA9 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SALL3Q9BXA9 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SALL3Q9BXA9 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
SALL3Q9BXA9 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SALL3Q9BXA9 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SALL3Q9BXA9 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC20.68■□□□□ 0.9
SALL3Q9BXA9 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
SALL3Q9BXA9 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC20.68■□□□□ 0.9
SALL3Q9BXA9 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SALL3Q9BXA9 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SALL3Q9BXA9 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC20.68■□□□□ 0.9
SALL3Q9BXA9 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SALL3Q9BXA9 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SALL3Q9BXA9 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
SALL3Q9BXA9 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SALL3Q9BXA9 RPS2P28-201ENST00000314255 741 ntBASIC20.68■□□□□ 0.9
SALL3Q9BXA9 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
SALL3Q9BXA9 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC20.68■□□□□ 0.9
SALL3Q9BXA9 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC20.68■□□□□ 0.9
SALL3Q9BXA9 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC20.68■□□□□ 0.9
SALL3Q9BXA9 UNC93B6-202ENST00000528242 690 ntBASIC20.68■□□□□ 0.9
SALL3Q9BXA9 AL662844.1-201ENST00000546340 181 ntBASIC20.68■□□□□ 0.9
SALL3Q9BXA9 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC20.68■□□□□ 0.9
SALL3Q9BXA9 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms