Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC28BQ9BUN5 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.26
CCDC28BQ9BUN5 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CCDC28BQ9BUN5 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
CCDC28BQ9BUN5 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 HLA-A-202ENST00000376806 1854 ntBASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 CD70-202ENST00000423145 881 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 KRT18P22-201ENST00000402024 1347 ntBASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28BQ9BUN5 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 TMA16-209ENST00000513272 803 ntTSL 2 BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 AL441883.1-201ENST00000566170 1045 ntBASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 SPEG-225ENST00000617028 815 ntTSL 5 BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28BQ9BUN5 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 AL049757.1-201ENST00000616842 1596 ntBASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 GPR89P-201ENST00000407924 1495 ntBASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms