Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
NKX3-1Q99801 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
NKX3-1Q99801 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
NKX3-1Q99801 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.01□□□□□ -0.01
NKX3-1Q99801 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
NKX3-1Q99801 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
NKX3-1Q99801 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
NKX3-1Q99801 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
NKX3-1Q99801 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC15.01□□□□□ -0.01
NKX3-1Q99801 FAM8A6P-201ENST00000407496 1135 ntBASIC15.01□□□□□ -0.01
NKX3-1Q99801 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
NKX3-1Q99801 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC15.01□□□□□ -0.01
NKX3-1Q99801 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC15.01□□□□□ -0.01
NKX3-1Q99801 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
NKX3-1Q99801 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC15.01□□□□□ -0.01
NKX3-1Q99801 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC15.01□□□□□ -0.01
NKX3-1Q99801 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC15.01□□□□□ -0.01
NKX3-1Q99801 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC15.01□□□□□ -0.01
NKX3-1Q99801 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC15.01□□□□□ -0.01
NKX3-1Q99801 SPEG-225ENST00000617028 815 ntTSL 5 BASIC15.01□□□□□ -0.01
NKX3-1Q99801 DFFB-212ENST00000625756 649 ntTSL 5 BASIC15.01□□□□□ -0.01
NKX3-1Q99801 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
NKX3-1Q99801 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
NKX3-1Q99801 OVCH1-AS1-204ENST00000641955 5529 ntBASIC15.01□□□□□ -0.01
NKX3-1Q99801 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC15.01□□□□□ -0.01
NKX3-1Q99801 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
NKX3-1Q99801 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
NKX3-1Q99801 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC15.01□□□□□ -0.01
NKX3-1Q99801 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
NKX3-1Q99801 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
NKX3-1Q99801 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
NKX3-1Q99801 AL603756.1-201ENST00000606511 2163 ntBASIC15.01□□□□□ -0.01
NKX3-1Q99801 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
NKX3-1Q99801 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
NKX3-1Q99801 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
NKX3-1Q99801 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC15.01□□□□□ -0.01
NKX3-1Q99801 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC15.01□□□□□ -0.01
NKX3-1Q99801 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
NKX3-1Q99801 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
NKX3-1Q99801 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
NKX3-1Q99801 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15□□□□□ -0.01
NKX3-1Q99801 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC15□□□□□ -0.01
NKX3-1Q99801 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC15□□□□□ -0.01
NKX3-1Q99801 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC15□□□□□ -0.01
NKX3-1Q99801 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC15□□□□□ -0.01
NKX3-1Q99801 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC15□□□□□ -0.01
NKX3-1Q99801 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC15□□□□□ -0.01
NKX3-1Q99801 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
NKX3-1Q99801 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
NKX3-1Q99801 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
NKX3-1Q99801 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
NKX3-1Q99801 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
NKX3-1Q99801 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC15□□□□□ -0.01
NKX3-1Q99801 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15□□□□□ -0.01
NKX3-1Q99801 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
NKX3-1Q99801 HBZP1-201ENST00000354915 429 ntBASIC15□□□□□ -0.01
NKX3-1Q99801 MIR662-201ENST00000384847 95 ntBASIC15□□□□□ -0.01
NKX3-1Q99801 AC112907.2-201ENST00000448639 330 ntBASIC15□□□□□ -0.01
NKX3-1Q99801 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
NKX3-1Q99801 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
NKX3-1Q99801 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC15□□□□□ -0.01
NKX3-1Q99801 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC15□□□□□ -0.01
NKX3-1Q99801 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC15□□□□□ -0.01
NKX3-1Q99801 TPM1-226ENST00000560959 925 ntTSL 2 BASIC15□□□□□ -0.01
NKX3-1Q99801 AC109462.3-201ENST00000573934 613 ntBASIC15□□□□□ -0.01
NKX3-1Q99801 AL390719.2-201ENST00000606993 987 ntBASIC15□□□□□ -0.01
NKX3-1Q99801 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC15□□□□□ -0.01
NKX3-1Q99801 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC15□□□□□ -0.01
NKX3-1Q99801 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15□□□□□ -0.01
NKX3-1Q99801 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC15□□□□□ -0.01
NKX3-1Q99801 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
NKX3-1Q99801 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
NKX3-1Q99801 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
NKX3-1Q99801 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
NKX3-1Q99801 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC15□□□□□ -0.01
NKX3-1Q99801 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC15□□□□□ -0.01
NKX3-1Q99801 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
NKX3-1Q99801 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC15□□□□□ -0.01
NKX3-1Q99801 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
NKX3-1Q99801 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15□□□□□ -0.01
NKX3-1Q99801 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
NKX3-1Q99801 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NKX3-1Q99801 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
NKX3-1Q99801 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
NKX3-1Q99801 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC14.99□□□□□ -0.01
NKX3-1Q99801 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC14.99□□□□□ -0.01
NKX3-1Q99801 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NKX3-1Q99801 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
NKX3-1Q99801 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
NKX3-1Q99801 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
NKX3-1Q99801 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NKX3-1Q99801 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NKX3-1Q99801 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
NKX3-1Q99801 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
NKX3-1Q99801 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
NKX3-1Q99801 GUK1-204ENST00000366721 689 ntTSL 3 BASIC14.99□□□□□ -0.01
NKX3-1Q99801 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NKX3-1Q99801 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC14.99□□□□□ -0.01
NKX3-1Q99801 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC14.99□□□□□ -0.01
NKX3-1Q99801 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms