Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
HPS3Q969F9 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.97■□□□□ 0.63
HPS3Q969F9 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
HPS3Q969F9 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HPS3Q969F9 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HPS3Q969F9 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HPS3Q969F9 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC18.97■□□□□ 0.63
HPS3Q969F9 DUX4L17-201ENST00000557360 1267 ntBASIC18.97■□□□□ 0.63
HPS3Q969F9 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HPS3Q969F9 RN7SL510P-201ENST00000581311 263 ntBASIC18.97■□□□□ 0.63
HPS3Q969F9 LINC01711-201ENST00000598340 967 ntBASIC18.97■□□□□ 0.63
HPS3Q969F9 NCF1C-201ENST00000438382 1427 ntBASIC18.97■□□□□ 0.63
HPS3Q969F9 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HPS3Q969F9 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18.97■□□□□ 0.63
HPS3Q969F9 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.97■□□□□ 0.63
HPS3Q969F9 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
HPS3Q969F9 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HPS3Q969F9 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HPS3Q969F9 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HPS3Q969F9 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HPS3Q969F9 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
HPS3Q969F9 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC18.97■□□□□ 0.63
HPS3Q969F9 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
HPS3Q969F9 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HPS3Q969F9 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
HPS3Q969F9 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HPS3Q969F9 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC18.97■□□□□ 0.63
HPS3Q969F9 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HPS3Q969F9 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC18.97■□□□□ 0.63
HPS3Q969F9 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC18.97■□□□□ 0.63
HPS3Q969F9 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HPS3Q969F9 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HPS3Q969F9 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HPS3Q969F9 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HPS3Q969F9 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
HPS3Q969F9 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HPS3Q969F9 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HPS3Q969F9 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
HPS3Q969F9 RPS2P1-201ENST00000434010 821 ntBASIC18.96■□□□□ 0.63
HPS3Q969F9 HNRNPDP1-201ENST00000439535 754 ntBASIC18.96■□□□□ 0.63
HPS3Q969F9 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18.96■□□□□ 0.63
HPS3Q969F9 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.96■□□□□ 0.63
HPS3Q969F9 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC18.96■□□□□ 0.63
HPS3Q969F9 AC148477.8-201ENST00000624298 468 ntBASIC18.96■□□□□ 0.63
HPS3Q969F9 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HPS3Q969F9 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
HPS3Q969F9 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HPS3Q969F9 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HPS3Q969F9 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC18.96■□□□□ 0.63
HPS3Q969F9 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.96■□□□□ 0.63
HPS3Q969F9 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HPS3Q969F9 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HPS3Q969F9 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
HPS3Q969F9 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
HPS3Q969F9 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
HPS3Q969F9 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HPS3Q969F9 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC18.95■□□□□ 0.62
HPS3Q969F9 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HPS3Q969F9 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.95■□□□□ 0.62
HPS3Q969F9 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC18.95■□□□□ 0.62
HPS3Q969F9 AC006504.4-201ENST00000592118 1568 ntBASIC18.95■□□□□ 0.62
HPS3Q969F9 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HPS3Q969F9 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HPS3Q969F9 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
HPS3Q969F9 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
HPS3Q969F9 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
HPS3Q969F9 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HPS3Q969F9 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.95■□□□□ 0.62
HPS3Q969F9 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
HPS3Q969F9 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
HPS3Q969F9 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
HPS3Q969F9 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC18.95■□□□□ 0.62
HPS3Q969F9 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
HPS3Q969F9 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.95■□□□□ 0.62
HPS3Q969F9 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC18.95■□□□□ 0.62
HPS3Q969F9 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.95■□□□□ 0.62
HPS3Q969F9 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18.95■□□□□ 0.62
HPS3Q969F9 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC18.95■□□□□ 0.62
HPS3Q969F9 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HPS3Q969F9 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC18.95■□□□□ 0.62
HPS3Q969F9 PCDHA14-201ENST00000506751 2298 ntBASIC18.95■□□□□ 0.62
HPS3Q969F9 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HPS3Q969F9 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
HPS3Q969F9 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC18.94■□□□□ 0.62
HPS3Q969F9 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HPS3Q969F9 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
HPS3Q969F9 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.94■□□□□ 0.62
HPS3Q969F9 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.94■□□□□ 0.62
HPS3Q969F9 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.94■□□□□ 0.62
HPS3Q969F9 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC18.94■□□□□ 0.62
HPS3Q969F9 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HPS3Q969F9 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HPS3Q969F9 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
HPS3Q969F9 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HPS3Q969F9 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HPS3Q969F9 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC18.94■□□□□ 0.62
HPS3Q969F9 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HPS3Q969F9 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.94■□□□□ 0.62
HPS3Q969F9 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HPS3Q969F9 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms