Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
RTF1Q92541 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
RTF1Q92541 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC22.27■■□□□ 1.16
RTF1Q92541 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
RTF1Q92541 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
RTF1Q92541 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
RTF1Q92541 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC22.27■■□□□ 1.16
RTF1Q92541 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC22.27■■□□□ 1.16
RTF1Q92541 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
RTF1Q92541 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
RTF1Q92541 NMU-203ENST00000507338 658 ntTSL 3 BASIC22.27■■□□□ 1.16
RTF1Q92541 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC22.27■■□□□ 1.16
RTF1Q92541 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
RTF1Q92541 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
RTF1Q92541 AC091812.2-201ENST00000619081 385 ntBASIC22.27■■□□□ 1.16
RTF1Q92541 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
RTF1Q92541 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
RTF1Q92541 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
RTF1Q92541 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC22.26■■□□□ 1.15
RTF1Q92541 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
RTF1Q92541 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
RTF1Q92541 FALEC-201ENST00000416894 566 ntTSL 3 BASIC22.26■■□□□ 1.15
RTF1Q92541 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC22.26■■□□□ 1.15
RTF1Q92541 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC22.26■■□□□ 1.15
RTF1Q92541 URGCP-206ENST00000446958 365 ntTSL 2 BASIC22.26■■□□□ 1.15
RTF1Q92541 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
RTF1Q92541 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC22.26■■□□□ 1.15
RTF1Q92541 RPL28-209ENST00000560055 670 ntTSL 3 BASIC22.26■■□□□ 1.15
RTF1Q92541 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC22.26■■□□□ 1.15
RTF1Q92541 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC22.26■■□□□ 1.15
RTF1Q92541 AL596442.2-201ENST00000610240 980 ntBASIC22.26■■□□□ 1.15
RTF1Q92541 AL645728.2-201ENST00000641974 660 ntBASIC22.26■■□□□ 1.15
RTF1Q92541 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
RTF1Q92541 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
RTF1Q92541 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
RTF1Q92541 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
RTF1Q92541 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC22.26■■□□□ 1.15
RTF1Q92541 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
RTF1Q92541 CROCCP2-202ENST00000412962 2773 ntBASIC22.26■■□□□ 1.15
RTF1Q92541 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
RTF1Q92541 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
RTF1Q92541 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC22.25■■□□□ 1.15
RTF1Q92541 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
RTF1Q92541 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC22.25■■□□□ 1.15
RTF1Q92541 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
RTF1Q92541 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
RTF1Q92541 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC22.25■■□□□ 1.15
RTF1Q92541 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
RTF1Q92541 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC22.25■■□□□ 1.15
RTF1Q92541 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
RTF1Q92541 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC22.25■■□□□ 1.15
RTF1Q92541 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC22.25■■□□□ 1.15
RTF1Q92541 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC22.25■■□□□ 1.15
RTF1Q92541 ACTG1P14-201ENST00000446382 1122 ntBASIC22.25■■□□□ 1.15
RTF1Q92541 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
RTF1Q92541 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
RTF1Q92541 AL031432.2-201ENST00000566714 459 ntBASIC22.25■■□□□ 1.15
RTF1Q92541 AL928711.1-201ENST00000570165 459 ntBASIC22.25■■□□□ 1.15
RTF1Q92541 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC22.25■■□□□ 1.15
RTF1Q92541 BSG-214ENST00000614867 960 ntTSL 3 BASIC22.25■■□□□ 1.15
RTF1Q92541 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
RTF1Q92541 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
RTF1Q92541 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
RTF1Q92541 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC22.25■■□□□ 1.15
RTF1Q92541 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC22.25■■□□□ 1.15
RTF1Q92541 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
RTF1Q92541 AC092919.2-201ENST00000623631 1645 ntBASIC22.24■■□□□ 1.15
RTF1Q92541 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
RTF1Q92541 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
RTF1Q92541 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
RTF1Q92541 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
RTF1Q92541 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
RTF1Q92541 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC22.24■■□□□ 1.15
RTF1Q92541 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
RTF1Q92541 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
RTF1Q92541 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
RTF1Q92541 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC22.24■■□□□ 1.15
RTF1Q92541 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
RTF1Q92541 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC22.24■■□□□ 1.15
RTF1Q92541 MMP17-203ENST00000535004 719 ntTSL 3 BASIC22.24■■□□□ 1.15
RTF1Q92541 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
RTF1Q92541 SNHG9-202ENST00000564014 471 ntBASIC22.24■■□□□ 1.15
RTF1Q92541 AP002472.1-201ENST00000577490 586 ntBASIC22.24■■□□□ 1.15
RTF1Q92541 AC005412.3-201ENST00000580309 715 ntBASIC22.24■■□□□ 1.15
RTF1Q92541 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC22.24■■□□□ 1.15
RTF1Q92541 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
RTF1Q92541 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC22.24■■□□□ 1.15
RTF1Q92541 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC22.24■■□□□ 1.15
RTF1Q92541 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC22.24■■□□□ 1.15
RTF1Q92541 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
RTF1Q92541 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
RTF1Q92541 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
RTF1Q92541 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
RTF1Q92541 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
RTF1Q92541 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC22.24■■□□□ 1.15
RTF1Q92541 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
RTF1Q92541 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC22.23■■□□□ 1.15
RTF1Q92541 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC22.23■■□□□ 1.15
RTF1Q92541 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
RTF1Q92541 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms