Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 INO80C-206ENST00000586489 594 ntTSL 3 BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB4Q8WW32 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB4Q8WW32 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB4Q8WW32 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB4Q8WW32 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
HMGB4Q8WW32 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.12■□□□□ 0.33
HMGB4Q8WW32 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
HMGB4Q8WW32 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB4Q8WW32 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB4Q8WW32 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB4Q8WW32 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.12■□□□□ 0.33
HMGB4Q8WW32 AC093214.1-201ENST00000511688 1107 ntBASIC17.12■□□□□ 0.33
HMGB4Q8WW32 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB4Q8WW32 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC17.12■□□□□ 0.33
HMGB4Q8WW32 DUX4L17-201ENST00000557360 1267 ntBASIC17.12■□□□□ 0.33
HMGB4Q8WW32 RARRES2P8-201ENST00000566335 367 ntBASIC17.12■□□□□ 0.33
HMGB4Q8WW32 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB4Q8WW32 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB4Q8WW32 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB4Q8WW32 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB4Q8WW32 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB4Q8WW32 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.12■□□□□ 0.33
HMGB4Q8WW32 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGB4Q8WW32 LINC00304-203ENST00000565008 1864 ntBASIC17.12■□□□□ 0.33
HMGB4Q8WW32 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 PKD1P1-201ENST00000458669 6805 ntBASIC17.11■□□□□ 0.33
HMGB4Q8WW32 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 CNN2P2-201ENST00000443536 909 ntBASIC17.11■□□□□ 0.33
HMGB4Q8WW32 CNN2P3-201ENST00000450201 906 ntBASIC17.11■□□□□ 0.33
HMGB4Q8WW32 COX20P2-201ENST00000452636 358 ntBASIC17.11■□□□□ 0.33
HMGB4Q8WW32 CFL1-212ENST00000531413 636 ntTSL 3 BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 TSFM-210ENST00000550559 897 ntTSL 5 BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 AC243562.1-201ENST00000560672 389 ntBASIC17.11■□□□□ 0.33
HMGB4Q8WW32 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 MIR4745-201ENST00000577608 62 ntBASIC17.11■□□□□ 0.33
HMGB4Q8WW32 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 AL136317.3-201ENST00000618497 906 ntBASIC17.11■□□□□ 0.33
HMGB4Q8WW32 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.11■□□□□ 0.33
HMGB4Q8WW32 AC012317.2-201ENST00000623305 2251 ntBASIC17.1■□□□□ 0.33
HMGB4Q8WW32 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms