Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 AC105020.1-201ENST00000435356 2205 ntBASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 NKILA-202ENST00000614771 2598 ntBASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 AC078925.2-201ENST00000624013 1973 ntBASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 AC092910.1-201ENST00000482027 1129 ntBASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 AP001160.2-201ENST00000596071 487 ntBASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.42■□□□□ 0.38
SHROOM3Q8TF72 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 AL021920.2-201ENST00000624828 1351 ntBASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 AC010654.1-201ENST00000615722 808 ntBASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 FLJ38576-201ENST00000623820 2459 ntBASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 AL603756.1-201ENST00000606511 2163 ntBASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
SHROOM3Q8TF72 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHROOM3Q8TF72 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHROOM3Q8TF72 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SHROOM3Q8TF72 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC17.4■□□□□ 0.38
SHROOM3Q8TF72 RNA5SP415-201ENST00000517246 115 ntBASIC17.4■□□□□ 0.38
SHROOM3Q8TF72 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.4■□□□□ 0.38
SHROOM3Q8TF72 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.4■□□□□ 0.38
SHROOM3Q8TF72 PIN1-206ENST00000587625 878 ntTSL 2 BASIC17.4■□□□□ 0.38
SHROOM3Q8TF72 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHROOM3Q8TF72 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHROOM3Q8TF72 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
SHROOM3Q8TF72 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SHROOM3Q8TF72 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHROOM3Q8TF72 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SHROOM3Q8TF72 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHROOM3Q8TF72 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SHROOM3Q8TF72 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
SHROOM3Q8TF72 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.4■□□□□ 0.38
SHROOM3Q8TF72 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SHROOM3Q8TF72 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
SHROOM3Q8TF72 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHROOM3Q8TF72 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.4■□□□□ 0.38
SHROOM3Q8TF72 AC108751.1-201ENST00000490852 363 ntBASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms