Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NPAS3Q8IXF0 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NPAS3Q8IXF0 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
NPAS3Q8IXF0 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
NPAS3Q8IXF0 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.66■□□□□ 0.42
NPAS3Q8IXF0 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NPAS3Q8IXF0 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NPAS3Q8IXF0 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.66■□□□□ 0.42
NPAS3Q8IXF0 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NPAS3Q8IXF0 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
NPAS3Q8IXF0 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NPAS3Q8IXF0 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
NPAS3Q8IXF0 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
NPAS3Q8IXF0 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NPAS3Q8IXF0 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NPAS3Q8IXF0 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
NPAS3Q8IXF0 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NPAS3Q8IXF0 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NPAS3Q8IXF0 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
NPAS3Q8IXF0 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.65■□□□□ 0.42
NPAS3Q8IXF0 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NPAS3Q8IXF0 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.65■□□□□ 0.42
NPAS3Q8IXF0 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NPAS3Q8IXF0 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NPAS3Q8IXF0 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC17.65■□□□□ 0.42
NPAS3Q8IXF0 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC17.65■□□□□ 0.42
NPAS3Q8IXF0 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NPAS3Q8IXF0 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC17.65■□□□□ 0.42
NPAS3Q8IXF0 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC17.65■□□□□ 0.42
NPAS3Q8IXF0 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC17.65■□□□□ 0.42
NPAS3Q8IXF0 AL009183.1-201ENST00000603760 355 ntBASIC17.65■□□□□ 0.42
NPAS3Q8IXF0 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
NPAS3Q8IXF0 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
NPAS3Q8IXF0 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
NPAS3Q8IXF0 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
NPAS3Q8IXF0 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.64■□□□□ 0.42
NPAS3Q8IXF0 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
NPAS3Q8IXF0 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 AC012569.1-201ENST00000591191 1524 ntBASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 AC055876.3-201ENST00000431496 288 ntBASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 RBPMS2P1-201ENST00000437762 623 ntBASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 AC138649.4-201ENST00000612222 287 ntBASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 TUBB3P1-201ENST00000405796 1332 ntBASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NPAS3Q8IXF0 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
NPAS3Q8IXF0 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NPAS3Q8IXF0 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
NPAS3Q8IXF0 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.63■□□□□ 0.41
NPAS3Q8IXF0 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NPAS3Q8IXF0 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.63■□□□□ 0.41
NPAS3Q8IXF0 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
NPAS3Q8IXF0 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
NPAS3Q8IXF0 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
NPAS3Q8IXF0 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
NPAS3Q8IXF0 KLK8-202ENST00000320838 456 ntTSL 5 BASIC17.63■□□□□ 0.41
NPAS3Q8IXF0 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
NPAS3Q8IXF0 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.63■□□□□ 0.41
NPAS3Q8IXF0 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
NPAS3Q8IXF0 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.63■□□□□ 0.41
NPAS3Q8IXF0 KLF2P3-201ENST00000451977 1087 ntBASIC17.63■□□□□ 0.41
NPAS3Q8IXF0 INGX-202ENST00000489074 768 ntBASIC17.63■□□□□ 0.41
NPAS3Q8IXF0 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
NPAS3Q8IXF0 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
NPAS3Q8IXF0 LINC01225-203ENST00000563550 1244 ntBASIC17.63■□□□□ 0.41
NPAS3Q8IXF0 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NPAS3Q8IXF0 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NPAS3Q8IXF0 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.63■□□□□ 0.41
NPAS3Q8IXF0 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
NPAS3Q8IXF0 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.63■□□□□ 0.41
NPAS3Q8IXF0 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NPAS3Q8IXF0 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms