Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 AC105233.2-201ENST00000523697 349 ntBASIC11.77□□□□□ -0.53
CSMD3Q7Z407 AF228730.5-201ENST00000530288 346 ntBASIC11.77□□□□□ -0.53
CSMD3Q7Z407 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 RAB34-223ENST00000636154 730 ntTSL 2 BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
CSMD3Q7Z407 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 IGHV3OR16-16-201ENST00000563644 343 ntBASIC11.76□□□□□ -0.53
CSMD3Q7Z407 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 HIST1H2BPS3-201ENST00000419683 341 ntBASIC11.76□□□□□ -0.53
CSMD3Q7Z407 AL512638.1-201ENST00000457493 794 ntBASIC11.76□□□□□ -0.53
CSMD3Q7Z407 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 MIR4538-201ENST00000581377 78 ntBASIC11.76□□□□□ -0.53
CSMD3Q7Z407 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 AL031055.1-201ENST00000606362 631 ntBASIC11.76□□□□□ -0.53
CSMD3Q7Z407 AC018529.1-201ENST00000613063 361 ntBASIC11.76□□□□□ -0.53
CSMD3Q7Z407 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 AL139099.5-201ENST00000635274 300 ntBASIC11.76□□□□□ -0.53
CSMD3Q7Z407 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 LINC00304-203ENST00000565008 1864 ntBASIC11.76□□□□□ -0.53
CSMD3Q7Z407 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 AL080243.2-201ENST00000418783 582 ntBASIC11.76□□□□□ -0.53
CSMD3Q7Z407 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 AC008735.3-201ENST00000596646 500 ntBASIC11.76□□□□□ -0.53
CSMD3Q7Z407 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 COX11-210ENST00000639671 696 ntBASIC11.76□□□□□ -0.53
CSMD3Q7Z407 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CSMD3Q7Z407 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CSMD3Q7Z407 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CSMD3Q7Z407 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC11.75□□□□□ -0.53
CSMD3Q7Z407 HCG4-201ENST00000418983 998 ntBASIC11.75□□□□□ -0.53
CSMD3Q7Z407 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC11.75□□□□□ -0.53
CSMD3Q7Z407 RN7SL837P-201ENST00000463010 287 ntBASIC11.75□□□□□ -0.53
CSMD3Q7Z407 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC11.75□□□□□ -0.53
CSMD3Q7Z407 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC11.75□□□□□ -0.53
CSMD3Q7Z407 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
CSMD3Q7Z407 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC11.75□□□□□ -0.53
CSMD3Q7Z407 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
CSMD3Q7Z407 BTBD7P1-201ENST00000447253 1453 ntBASIC11.75□□□□□ -0.53
CSMD3Q7Z407 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC11.75□□□□□ -0.53
CSMD3Q7Z407 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
CSMD3Q7Z407 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms