Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 DRAXINP1-201ENST00000437611 948 ntBASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 KRT18P65-201ENST00000439811 1286 ntBASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 AC092597.1-201ENST00000487352 616 ntBASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 KRT89P-201ENST00000620027 1478 ntBASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM3Q53GG5 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
PDLIM3Q53GG5 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
PDLIM3Q53GG5 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
PDLIM3Q53GG5 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
PDLIM3Q53GG5 AC009949.1-201ENST00000623048 1830 ntBASIC14.27□□□□□ -0.12
PDLIM3Q53GG5 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
PDLIM3Q53GG5 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
PDLIM3Q53GG5 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC14.27□□□□□ -0.12
PDLIM3Q53GG5 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
PDLIM3Q53GG5 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
PDLIM3Q53GG5 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
PDLIM3Q53GG5 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
PDLIM3Q53GG5 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.27□□□□□ -0.12
PDLIM3Q53GG5 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
PDLIM3Q53GG5 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC14.27□□□□□ -0.12
PDLIM3Q53GG5 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
PDLIM3Q53GG5 PBK-203ENST00000522944 1499 ntTSL 2 BASIC14.27□□□□□ -0.12
PDLIM3Q53GG5 AC016396.2-201ENST00000562575 1417 ntBASIC14.27□□□□□ -0.12
PDLIM3Q53GG5 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
PDLIM3Q53GG5 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
PDLIM3Q53GG5 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC14.27□□□□□ -0.12
PDLIM3Q53GG5 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC14.27□□□□□ -0.12
PDLIM3Q53GG5 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 AC098831.1-202ENST00000438821 336 ntBASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 CIB2-208ENST00000560618 804 ntTSL 2 BASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 AP001160.2-201ENST00000596071 487 ntBASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 AL773604.1-201ENST00000617417 272 ntBASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 AC055717.3-201ENST00000622967 595 ntBASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 TNRC18P3-201ENST00000441896 2691 ntBASIC14.27□□□□□ -0.13
PDLIM3Q53GG5 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms