Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 AL049757.1-201ENST00000616842 1596 ntBASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 AC132938.5-201ENST00000624980 1813 ntBASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CCDC144BQ3MJ40 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC19.89■□□□□ 0.78
CCDC144BQ3MJ40 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
CCDC144BQ3MJ40 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
CCDC144BQ3MJ40 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC19.89■□□□□ 0.78
CCDC144BQ3MJ40 HTR7P1-202ENST00000624664 4411 ntBASIC19.89■□□□□ 0.78
CCDC144BQ3MJ40 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC144BQ3MJ40 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC144BQ3MJ40 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC144BQ3MJ40 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC144BQ3MJ40 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC144BQ3MJ40 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
CCDC144BQ3MJ40 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC144BQ3MJ40 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
CCDC144BQ3MJ40 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC144BQ3MJ40 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC19.89■□□□□ 0.77
CCDC144BQ3MJ40 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC19.89■□□□□ 0.77
CCDC144BQ3MJ40 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC19.89■□□□□ 0.77
CCDC144BQ3MJ40 PCDH8P1-201ENST00000428983 2773 ntBASIC19.89■□□□□ 0.77
CCDC144BQ3MJ40 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC19.89■□□□□ 0.77
CCDC144BQ3MJ40 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC19.89■□□□□ 0.77
CCDC144BQ3MJ40 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC19.89■□□□□ 0.77
CCDC144BQ3MJ40 AC006504.4-201ENST00000592118 1568 ntBASIC19.89■□□□□ 0.77
CCDC144BQ3MJ40 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC19.89■□□□□ 0.77
CCDC144BQ3MJ40 AC148477.5-201ENST00000625164 1645 ntBASIC19.89■□□□□ 0.77
CCDC144BQ3MJ40 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC19.89■□□□□ 0.77
CCDC144BQ3MJ40 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
CCDC144BQ3MJ40 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 PCDHB19P-201ENST00000570871 2371 ntBASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 AGGF1P2-201ENST00000426656 2106 ntBASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 AC133963.1-201ENST00000504166 1679 ntBASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 ELK2BP-201ENST00000415014 1224 ntBASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 DNAJB3-202ENST00000449667 1266 ntBASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 TCAP-202ENST00000578283 583 ntTSL 5 BASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 AC106886.4-201ENST00000623557 2502 ntBASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC144BQ3MJ40 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC144BQ3MJ40 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC144BQ3MJ40 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC144BQ3MJ40 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC144BQ3MJ40 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC144BQ3MJ40 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC144BQ3MJ40 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC144BQ3MJ40 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC144BQ3MJ40 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
CCDC144BQ3MJ40 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC19.87■□□□□ 0.77
CCDC144BQ3MJ40 HMGN1P19-201ENST00000436976 333 ntBASIC19.87■□□□□ 0.77
CCDC144BQ3MJ40 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC19.87■□□□□ 0.77
CCDC144BQ3MJ40 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC144BQ3MJ40 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC144BQ3MJ40 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC19.87■□□□□ 0.77
CCDC144BQ3MJ40 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC19.87■□□□□ 0.77
CCDC144BQ3MJ40 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
CCDC144BQ3MJ40 AC027796.2-201ENST00000575326 344 ntBASIC19.87■□□□□ 0.77
CCDC144BQ3MJ40 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC144BQ3MJ40 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC144BQ3MJ40 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC144BQ3MJ40 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC144BQ3MJ40 AC046158.3-201ENST00000624947 2558 ntBASIC19.87■□□□□ 0.77
CCDC144BQ3MJ40 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC144BQ3MJ40 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC144BQ3MJ40 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms