Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
RAE1P78406 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RAE1P78406 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RAE1P78406 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
RAE1P78406 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
RAE1P78406 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.24■□□□□ 0.19
RAE1P78406 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.24■□□□□ 0.19
RAE1P78406 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RAE1P78406 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RAE1P78406 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.23■□□□□ 0.19
RAE1P78406 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RAE1P78406 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.23■□□□□ 0.19
RAE1P78406 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.23■□□□□ 0.19
RAE1P78406 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
RAE1P78406 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RAE1P78406 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
RAE1P78406 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
RAE1P78406 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RAE1P78406 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC16.23■□□□□ 0.19
RAE1P78406 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RAE1P78406 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
RAE1P78406 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.23■□□□□ 0.19
RAE1P78406 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.23■□□□□ 0.19
RAE1P78406 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.23■□□□□ 0.19
RAE1P78406 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
RAE1P78406 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
RAE1P78406 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.23■□□□□ 0.19
RAE1P78406 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.23■□□□□ 0.19
RAE1P78406 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.23■□□□□ 0.19
RAE1P78406 TERC-201ENST00000602385 541 ntBASIC16.23■□□□□ 0.19
RAE1P78406 AL139424.1-201ENST00000607572 797 ntBASIC16.23■□□□□ 0.19
RAE1P78406 AL589182.2-201ENST00000619332 1049 ntBASIC16.23■□□□□ 0.19
RAE1P78406 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
RAE1P78406 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
RAE1P78406 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
RAE1P78406 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RAE1P78406 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
RAE1P78406 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
RAE1P78406 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.23■□□□□ 0.19
RAE1P78406 AL603756.1-201ENST00000606511 2163 ntBASIC16.23■□□□□ 0.19
RAE1P78406 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RAE1P78406 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
RAE1P78406 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RAE1P78406 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
RAE1P78406 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RAE1P78406 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.22■□□□□ 0.19
RAE1P78406 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.22■□□□□ 0.19
RAE1P78406 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RAE1P78406 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.22■□□□□ 0.19
RAE1P78406 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.22■□□□□ 0.19
RAE1P78406 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RAE1P78406 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RAE1P78406 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.22■□□□□ 0.19
RAE1P78406 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RAE1P78406 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.22■□□□□ 0.19
RAE1P78406 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.22■□□□□ 0.19
RAE1P78406 AF238378.1-201ENST00000526806 358 ntBASIC16.22■□□□□ 0.19
RAE1P78406 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.22■□□□□ 0.19
RAE1P78406 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.22■□□□□ 0.19
RAE1P78406 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
RAE1P78406 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RAE1P78406 MTDHP4-201ENST00000600287 670 ntBASIC16.22■□□□□ 0.19
RAE1P78406 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RAE1P78406 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.22■□□□□ 0.19
RAE1P78406 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC16.22■□□□□ 0.19
RAE1P78406 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RAE1P78406 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
RAE1P78406 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RAE1P78406 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RAE1P78406 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.22■□□□□ 0.19
RAE1P78406 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
RAE1P78406 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.22■□□□□ 0.19
RAE1P78406 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RAE1P78406 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.22■□□□□ 0.19
RAE1P78406 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RAE1P78406 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
RAE1P78406 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RAE1P78406 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RAE1P78406 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
RAE1P78406 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.21■□□□□ 0.19
RAE1P78406 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.21■□□□□ 0.19
RAE1P78406 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RAE1P78406 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.21■□□□□ 0.19
RAE1P78406 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC16.21■□□□□ 0.19
RAE1P78406 HLA-A-202ENST00000376806 1854 ntBASIC16.21■□□□□ 0.19
RAE1P78406 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
RAE1P78406 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.21■□□□□ 0.19
RAE1P78406 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
RAE1P78406 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RAE1P78406 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
RAE1P78406 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
RAE1P78406 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.21■□□□□ 0.19
RAE1P78406 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.21■□□□□ 0.19
RAE1P78406 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.21■□□□□ 0.19
RAE1P78406 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.21■□□□□ 0.19
RAE1P78406 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.21■□□□□ 0.19
RAE1P78406 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.21■□□□□ 0.19
RAE1P78406 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RAE1P78406 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.21■□□□□ 0.19
RAE1P78406 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms