Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC19.65■□□□□ 0.74
HMGCS2P54868 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC19.65■□□□□ 0.74
HMGCS2P54868 MTRF1LP2-201ENST00000506027 1122 ntBASIC19.65■□□□□ 0.74
HMGCS2P54868 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC19.65■□□□□ 0.74
HMGCS2P54868 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC19.65■□□□□ 0.74
HMGCS2P54868 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HMGCS2P54868 AC140878.1-201ENST00000565277 250 ntBASIC19.65■□□□□ 0.74
HMGCS2P54868 U1.21-201ENST00000580816 167 ntBASIC19.65■□□□□ 0.74
HMGCS2P54868 PRR29-209ENST00000582540 967 ntTSL 2 BASIC19.65■□□□□ 0.74
HMGCS2P54868 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HMGCS2P54868 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC19.65■□□□□ 0.74
HMGCS2P54868 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HMGCS2P54868 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGCS2P54868 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
HMGCS2P54868 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGCS2P54868 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGCS2P54868 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGCS2P54868 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGCS2P54868 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19.65■□□□□ 0.74
HMGCS2P54868 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGCS2P54868 GNAS-203ENST00000306120 1878 ntBASIC19.65■□□□□ 0.74
HMGCS2P54868 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
HMGCS2P54868 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC19.64■□□□□ 0.74
HMGCS2P54868 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
HMGCS2P54868 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
HMGCS2P54868 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.64■□□□□ 0.74
HMGCS2P54868 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.74
HMGCS2P54868 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
HMGCS2P54868 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
HMGCS2P54868 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HMGCS2P54868 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HMGCS2P54868 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGCS2P54868 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC19.64■□□□□ 0.73
HMGCS2P54868 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC19.64■□□□□ 0.73
HMGCS2P54868 TSPY16P-201ENST00000449843 468 ntBASIC19.64■□□□□ 0.73
HMGCS2P54868 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC19.64■□□□□ 0.73
HMGCS2P54868 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HMGCS2P54868 AC190387.1-201ENST00000551683 408 ntBASIC19.64■□□□□ 0.73
HMGCS2P54868 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
HMGCS2P54868 RN7SL204P-201ENST00000582831 262 ntBASIC19.64■□□□□ 0.73
HMGCS2P54868 AL031055.1-201ENST00000606362 631 ntBASIC19.64■□□□□ 0.73
HMGCS2P54868 WT1-AS_2.1-201ENST00000613208 137 ntBASIC19.64■□□□□ 0.73
HMGCS2P54868 AL390754.1-201ENST00000619088 582 ntBASIC19.64■□□□□ 0.73
HMGCS2P54868 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC19.64■□□□□ 0.73
HMGCS2P54868 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC19.64■□□□□ 0.73
HMGCS2P54868 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
HMGCS2P54868 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HMGCS2P54868 EGFEM1P-202ENST00000431685 1563 ntBASIC19.64■□□□□ 0.73
HMGCS2P54868 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
HMGCS2P54868 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGCS2P54868 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.73
HMGCS2P54868 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
HMGCS2P54868 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGCS2P54868 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC19.64■□□□□ 0.73
HMGCS2P54868 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HMGCS2P54868 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGCS2P54868 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC19.64■□□□□ 0.73
HMGCS2P54868 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HMGCS2P54868 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGCS2P54868 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
HMGCS2P54868 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGCS2P54868 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HMGCS2P54868 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGCS2P54868 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGCS2P54868 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC19.63■□□□□ 0.73
HMGCS2P54868 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGCS2P54868 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HMGCS2P54868 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGCS2P54868 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC19.63■□□□□ 0.73
HMGCS2P54868 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGCS2P54868 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGCS2P54868 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGCS2P54868 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGCS2P54868 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
HMGCS2P54868 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGCS2P54868 SPDYE7P-202ENST00000420373 878 ntBASIC19.63■□□□□ 0.73
HMGCS2P54868 HNRNPA1P40-201ENST00000426371 1278 ntBASIC19.63■□□□□ 0.73
HMGCS2P54868 AC002472.2-201ENST00000442739 958 ntBASIC19.63■□□□□ 0.73
HMGCS2P54868 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGCS2P54868 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC19.63■□□□□ 0.73
HMGCS2P54868 IGHV3-42-201ENST00000520410 361 ntBASIC19.63■□□□□ 0.73
HMGCS2P54868 GATD1-206ENST00000526325 756 ntTSL 5 BASIC19.63■□□□□ 0.73
HMGCS2P54868 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC19.63■□□□□ 0.73
HMGCS2P54868 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC19.63■□□□□ 0.73
HMGCS2P54868 MIR6080-201ENST00000617359 66 ntBASIC19.63■□□□□ 0.73
HMGCS2P54868 BCL2-203ENST00000589955 5011 ntBASIC19.63■□□□□ 0.73
HMGCS2P54868 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGCS2P54868 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.63■□□□□ 0.73
HMGCS2P54868 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGCS2P54868 AC135050.7-201ENST00000624508 2218 ntBASIC19.63■□□□□ 0.73
HMGCS2P54868 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
HMGCS2P54868 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
HMGCS2P54868 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGCS2P54868 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGCS2P54868 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGCS2P54868 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGCS2P54868 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGCS2P54868 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC19.62■□□□□ 0.73
HMGCS2P54868 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGCS2P54868 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms