Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC19.73■□□□□ 0.75
CTCFP49711 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CTCFP49711 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.73■□□□□ 0.75
CTCFP49711 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CTCFP49711 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CTCFP49711 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.72■□□□□ 0.75
CTCFP49711 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CTCFP49711 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.72■□□□□ 0.75
CTCFP49711 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.72■□□□□ 0.75
CTCFP49711 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.72■□□□□ 0.75
CTCFP49711 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CTCFP49711 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CTCFP49711 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC19.72■□□□□ 0.75
CTCFP49711 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CTCFP49711 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CTCFP49711 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
CTCFP49711 AC005332.8-201ENST00000622750 2735 ntBASIC19.72■□□□□ 0.75
CTCFP49711 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
CTCFP49711 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CTCFP49711 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CTCFP49711 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CTCFP49711 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC19.72■□□□□ 0.75
CTCFP49711 MYCLP1-201ENST00000372451 1075 ntBASIC19.72■□□□□ 0.75
CTCFP49711 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CTCFP49711 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC19.72■□□□□ 0.75
CTCFP49711 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC19.72■□□□□ 0.75
CTCFP49711 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CTCFP49711 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CTCFP49711 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CTCFP49711 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC19.72■□□□□ 0.75
CTCFP49711 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CTCFP49711 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC19.72■□□□□ 0.75
CTCFP49711 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CTCFP49711 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC19.72■□□□□ 0.75
CTCFP49711 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC19.72■□□□□ 0.75
CTCFP49711 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC19.72■□□□□ 0.75
CTCFP49711 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CTCFP49711 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC19.72■□□□□ 0.75
CTCFP49711 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC19.72■□□□□ 0.75
CTCFP49711 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CTCFP49711 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CTCFP49711 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
CTCFP49711 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CTCFP49711 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CTCFP49711 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CTCFP49711 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CTCFP49711 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CTCFP49711 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC19.71■□□□□ 0.75
CTCFP49711 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC19.71■□□□□ 0.75
CTCFP49711 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CTCFP49711 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CTCFP49711 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CTCFP49711 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.71■□□□□ 0.75
CTCFP49711 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CTCFP49711 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CTCFP49711 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CTCFP49711 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
CTCFP49711 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CTCFP49711 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC19.71■□□□□ 0.75
CTCFP49711 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC19.71■□□□□ 0.75
CTCFP49711 RN7SL837P-201ENST00000463010 287 ntBASIC19.71■□□□□ 0.75
CTCFP49711 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC19.71■□□□□ 0.75
CTCFP49711 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC19.71■□□□□ 0.75
CTCFP49711 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC19.71■□□□□ 0.75
CTCFP49711 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC19.71■□□□□ 0.75
CTCFP49711 RHOQP1-201ENST00000555758 579 ntBASIC19.71■□□□□ 0.75
CTCFP49711 AC008267.7-201ENST00000624570 1194 ntBASIC19.71■□□□□ 0.75
CTCFP49711 RAB34-223ENST00000636154 730 ntTSL 2 BASIC19.71■□□□□ 0.75
CTCFP49711 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
CTCFP49711 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CTCFP49711 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.71■□□□□ 0.75
CTCFP49711 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CTCFP49711 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.71■□□□□ 0.75
CTCFP49711 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC19.71■□□□□ 0.75
CTCFP49711 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.7■□□□□ 0.74
CTCFP49711 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CTCFP49711 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CTCFP49711 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.7■□□□□ 0.74
CTCFP49711 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CTCFP49711 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTCFP49711 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTCFP49711 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTCFP49711 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
CTCFP49711 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC19.7■□□□□ 0.74
CTCFP49711 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CTCFP49711 MIR1908-201ENST00000410394 80 ntBASIC19.7■□□□□ 0.74
CTCFP49711 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC19.7■□□□□ 0.74
CTCFP49711 HIST1H2BPS3-201ENST00000419683 341 ntBASIC19.7■□□□□ 0.74
CTCFP49711 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC19.7■□□□□ 0.74
CTCFP49711 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC19.7■□□□□ 0.74
CTCFP49711 GOLGA2P4-201ENST00000441462 777 ntBASIC19.7■□□□□ 0.74
CTCFP49711 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC19.7■□□□□ 0.74
CTCFP49711 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTCFP49711 SLC25A6P2-201ENST00000497974 877 ntBASIC19.7■□□□□ 0.74
CTCFP49711 WASH4P-201ENST00000564273 1246 ntBASIC19.7■□□□□ 0.74
CTCFP49711 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC19.7■□□□□ 0.74
CTCFP49711 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC19.7■□□□□ 0.74
CTCFP49711 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC19.7■□□□□ 0.74
CTCFP49711 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC19.7■□□□□ 0.74
CTCFP49711 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms