Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CXCL12P48061 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CXCL12P48061 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CXCL12P48061 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC16.91■□□□□ 0.3
CXCL12P48061 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC16.91■□□□□ 0.3
CXCL12P48061 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC16.91■□□□□ 0.3
CXCL12P48061 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CXCL12P48061 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.91■□□□□ 0.3
CXCL12P48061 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CXCL12P48061 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CXCL12P48061 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CXCL12P48061 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
CXCL12P48061 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CXCL12P48061 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CXCL12P48061 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CXCL12P48061 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CXCL12P48061 LYSMD4-203ENST00000378904 2122 ntBASIC16.9■□□□□ 0.3
CXCL12P48061 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CXCL12P48061 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CXCL12P48061 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CXCL12P48061 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.9■□□□□ 0.3
CXCL12P48061 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CXCL12P48061 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CXCL12P48061 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CXCL12P48061 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CXCL12P48061 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CXCL12P48061 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CXCL12P48061 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CXCL12P48061 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
CXCL12P48061 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
CXCL12P48061 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CXCL12P48061 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.9■□□□□ 0.3
CXCL12P48061 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC16.9■□□□□ 0.3
CXCL12P48061 AL138828.2-201ENST00000615812 383 ntBASIC16.9■□□□□ 0.3
CXCL12P48061 SPDYE12P-201ENST00000618416 771 ntBASIC16.9■□□□□ 0.3
CXCL12P48061 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.9■□□□□ 0.3
CXCL12P48061 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CXCL12P48061 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.9■□□□□ 0.3
CXCL12P48061 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC16.9■□□□□ 0.3
CXCL12P48061 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC16.9■□□□□ 0.3
CXCL12P48061 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CXCL12P48061 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CXCL12P48061 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.9■□□□□ 0.3
CXCL12P48061 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CXCL12P48061 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
CXCL12P48061 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.9■□□□□ 0.3
CXCL12P48061 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CXCL12P48061 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CXCL12P48061 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
CXCL12P48061 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CXCL12P48061 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CXCL12P48061 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CXCL12P48061 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
CXCL12P48061 AP3S2-216ENST00000617003 1561 ntBASIC16.89■□□□□ 0.3
CXCL12P48061 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
CXCL12P48061 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
CXCL12P48061 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.3
CXCL12P48061 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
CXCL12P48061 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.89■□□□□ 0.3
CXCL12P48061 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CXCL12P48061 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CXCL12P48061 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
CXCL12P48061 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
CXCL12P48061 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC16.89■□□□□ 0.29
CXCL12P48061 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CXCL12P48061 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CXCL12P48061 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CXCL12P48061 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CXCL12P48061 HLA-DQB1-201ENST00000374943 1656 ntBASIC16.89■□□□□ 0.29
CXCL12P48061 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CXCL12P48061 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.89■□□□□ 0.29
CXCL12P48061 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CXCL12P48061 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
CXCL12P48061 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
CXCL12P48061 PTPA-220ENST00000436883 532 ntTSL 4 BASIC16.89■□□□□ 0.29
CXCL12P48061 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CXCL12P48061 AC105233.2-201ENST00000523697 349 ntBASIC16.89■□□□□ 0.29
CXCL12P48061 AF228730.5-201ENST00000530288 346 ntBASIC16.89■□□□□ 0.29
CXCL12P48061 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.89■□□□□ 0.29
CXCL12P48061 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC16.89■□□□□ 0.29
CXCL12P48061 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.89■□□□□ 0.29
CXCL12P48061 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.29
CXCL12P48061 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CXCL12P48061 AC007967.4-201ENST00000614700 386 ntBASIC16.89■□□□□ 0.29
CXCL12P48061 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CXCL12P48061 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CXCL12P48061 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CXCL12P48061 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC16.89■□□□□ 0.29
CXCL12P48061 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CXCL12P48061 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CXCL12P48061 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.89■□□□□ 0.29
CXCL12P48061 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CXCL12P48061 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CXCL12P48061 AC138028.4-201ENST00000564984 1845 ntBASIC16.89■□□□□ 0.29
CXCL12P48061 TOP3BP1-201ENST00000420768 1380 ntBASIC16.89■□□□□ 0.29
CXCL12P48061 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC16.89■□□□□ 0.29
CXCL12P48061 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
CXCL12P48061 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CXCL12P48061 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CXCL12P48061 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms